New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 4597121	NA (NA)	21 (0.180)	20/230	10.7	NA	noncoding (24/39 nt)	REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_bme_pgi	= 4597126	NA (NA)					noncoding (29/39 nt)	REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CGCGATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/4596963‑4597121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtaggtcgcaTAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTAATTACGCCTTTAATTAAC  <  NC_000913_3_bme_pgi/4597126‑4596986                                                                                                                                                                                                                                                                                                              CGCGATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTG                                                                                                                                                        <  4:524902/150‑1   CGATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTGATAATGTGTTGTAAGCCGTAGAAGGCGTGTA                                                                                                                                                      <  2:765887/150‑1          ATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCA                                                                                                                                               >  4:967034/1‑150                     TGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGTGTGTAGGTCGCATAGGGTGCGAC                                                                                                                                    >  4:637762/1‑150                        GTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGTGTGTAGGTCGCATAGGGTGCGACCTA                                                                                                                                 <  3:637762/150‑1                         TTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTAC                                                                                                                                <  2:162359/150‑1                              TAAATGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGGCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACACGCC                                                                                                                           <  4:276708/150‑1                                                    aatGGCGAGATTATTAAAGTTGCTATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGTGTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTA                                                                                                     <  4:769059/147‑1                                                               TATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGT                                                                                                                                         >  1:947969/1‑103                                                               TATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGT                                                                                                                                         <  2:947969/103‑1                                                                 TTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTA                                                                                                                                 <  1:212727/109‑1                                                                 TTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTA                                                                                                                                 >  2:212727/1‑109                                                                     AGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGTGTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTAC                                                                                                                     <  1:830361/117‑1                                                                     AGTTGCCATGCAGCGTACGGGGAAGTGTTGCGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGTGTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTAC                                                                                                                     >  2:830361/1‑117                                                                          CCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGG                                                                                                                   <  2:1437042/114‑1                                                                          CCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGG                                                                                                                   >  1:1437042/1‑114                                                                                  CGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACACGCCT                                                                                                                          <  3:693325/99‑1                                                                                  CGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACACGCCT                                                                                                                          >  4:693325/1‑99                                                                                                 TGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACAC                                                                                                                              >  2:102925/1‑80                                                                                                 TGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACAC                                                                                                                              <  1:102925/80‑1                                                                                                                                        GCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACC                                                                                                                                   <  1:420687/36‑1                                                                                                                                        GCCGTAGAAGGCGTGTAGGTCGCATAGGGTGCGACC                                                                                                                                   >  2:420687/1‑36                                                                                                                                            TAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAGAAAAACAGCGCC                                                                             >  2:185448/1‑86                                                                                                                                            TAGAAGGCGTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAGAAAAACAGCGCC                                                                             <  1:185448/86‑1                                                                                                                                                    GTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTAATTACGCCTTTAATT     <  3:51013/150‑1                                                                                                                                                    GTGTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTAATTACGCCTTTAATT     <  1:1103280/150‑1                                                                                                                                                      GTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTACTTACGCCTTTAAGTAA   >  1:508022/1‑150                                                                                                                                                      GTAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTAATTACGCCTTTAATTAA   >  3:967034/1‑150                                                                                                                                                      GTAGGGCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTAATTACGCCTTTAATTAA   <  2:1521462/150‑1                                                                                                                                                       TAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGC                                                        >  2:597870/1‑96                                                                                                                                                       TAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGC                                                        <  1:597870/96‑1                                                                                                                                                       TAGGTCGCATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCAGAAGCTGTATGTCAACTTTATTAAGCTCGCCTTATCAGACTGGAATTACGCCTTTCATTAAC  >  1:1590295/1‑150                                                                                                                                                               ATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTAAT                  <  2:1044217/126‑1                                                                                                                                                               ATAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTAAT                  >  1:1044217/1‑126                                                                                                                                                                                                                                                                                                              CGCGATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/4596963‑4597121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtaggtcgcaTAGGGTGCGACCTACACGCCTTCTACGGCTTACAACACATTATTAAGAAACAAAAAAAACAGCGCCCAACACTTCCCCGGACGCTGCATGGCAACTTTAATAATCTCGCCTTATCAGAAAGTAATTACGCCTTTAATTAAC  <  NC_000913_3_bme_pgi/4597126‑4596986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.