mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 32 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4544872 | 99 (1.760) | 3 (0.050) | 3/100 | NT | 2.9% | intergenic (‑691/‑765) | yjhA/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | AP009048 | = 4544897 | 106 (1.920) | intergenic (‑716/‑740) | yjhA/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA | |||||
| * | ? | AP009048 | = 4540456 | 94 (1.670) | 3 (0.060) | 3/94 | NT | 3.0% | coding (762/1017 nt) | yjhR | predicted frameshift suppressor |
| ? | AP009048 | = 4540471 | 108 (2.080) | coding (777/1017 nt) | yjhR | predicted frameshift suppressor | |||||
| * | ? | AP009048 | = 4429786 | 73 (1.300) | 3 (0.060) | 3/92 | NT | 4.0% | intergenic (‑315/‑12) | yjfY/rpsF | hypothetical protein/30S ribosomal subunit protein S6 |
| ? | AP009048 | = 4429805 | 80 (1.580) | coding (8/396 nt) | rpsF | 30S ribosomal subunit protein S6 | |||||
| * | ? | AP009048 | = 4281326 | 82 (1.460) | 4 (0.080) | 4/90 | NT | 4.6% | coding (268/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | AP009048 | = 4281337 | 93 (1.870) | coding (279/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing | |||||
| * | ? | AP009048 | = 4261130 | 85 (1.510) | 3 (0.060) | 3/88 | NT | 4.2% | coding (426/609 nt) | lexA | DNA‑binding transcriptional repressor |
| ? | AP009048 | = 4261163 | 64 (1.320) | coding (459/609 nt) | lexA | DNA‑binding transcriptional repressor | |||||
| * | ? | AP009048 | = 4059186 | 71 (1.260) | 3 (0.060) | 3/94 | NT | 4.2% | coding (92/489 nt) | yhhY | predicted acetyltransferase |
| ? | AP009048 | = 4059197 | 71 (1.370) | coding (81/489 nt) | yhhY | predicted acetyltransferase | |||||
| * | ? | AP009048 | 4012587 = | 70 (1.240) | 3 (0.060) | 3/88 | NT | 5.0% | coding (1711/2736 nt) | rbbA | fused ribosome‑associated ATPases |
| ? | AP009048 | 4012616 = | 54 (1.110) | coding (1740/2736 nt) | rbbA | fused ribosome‑associated ATPases | |||||
| * | ? | AP009048 | = 4001811 | 94 (1.670) | 3 (0.060) | 3/92 | NT | 3.3% | coding (963/1500 nt) | pitA | phosphate transporter, low‑affinity |
| ? | AP009048 | = 4001825 | 91 (1.790) | coding (949/1500 nt) | pitA | phosphate transporter, low‑affinity | |||||
| * | ? | AP009048 | = 3672611 | 67 (1.190) | 3 (0.060) | 3/92 | NT | 4.4% | coding (160/1485 nt) | gpp | guanosine pentaphosphatase/exopolyphosphatase |
| ? | AP009048 | = 3672620 | 71 (1.400) | coding (169/1485 nt) | gpp | guanosine pentaphosphatase/exopolyphosphatase | |||||
| * | ? | AP009048 | 3614559 = | 72 (1.280) | 3 (0.060) | 3/92 | NT | 4.5% | coding (178/270 nt) | tatA | TatABCE protein translocation system subunit |
| ? | AP009048 | 3614585 = | 62 (1.220) | coding (152/270 nt) | tatA | TatABCE protein translocation system subunit | |||||