New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 4544872	99 (1.760)	3 (0.050)	3/100	NT	2.9%	intergenic (‑691/‑765)	yjhA/fimB	N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA
	?	AP009048	= 4544897	106 (1.920)					intergenic (‑716/‑740)	yjhA/fimB	N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA
Rejected: Frequency below/above cutoff threshold.

GTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/4544831‑4544872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aACATATTTCATGATGAGAATTATGCTCAGCCTGATGGCGGGTAAACACTGATTTTCACC  <  AP009048/4544897‑4544839                                                                                                       GTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCTGAGCATATTTCATGATGAGAATTATGC                                    <  1:3579064/67‑1            GAAAATCAGTGTTTACCCGCCATCAGGCTGAACATATTTCATGATGAGAATTA                                       <  1:4361090/53‑1              AAATCAGTGTTTACCCGCCATCAGGCTGAACATATTTCATGATGAGAATTATG                                     >  1:1472504/1‑53                                          AACATATTTCATGATGAGAATTATGCTCAGCCTGATGGCGGGTAAACACTGATTTTCACC  <  1:2752670/60‑1                                          AACATATTTCATGATGAGAATTATGCTCAGCCTGATGGCGGGTAAACACTGAT         >  1:3489064/1‑53                                          AACATATTTCATGATGAGAATTATGCTCAGCCTGATGGCGGGTA                  <  1:3610032/44‑1                                          AACATATTTCATGATGAGAATTATGCTCAGCCTGATGGCGGGTA                  <  1:549727/44‑1                                                                                                       GTGAGCTTGGTGAAAATCAGTGTTTACCCGCCATCAGGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/4544831‑4544872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aACATATTTCATGATGAGAATTATGCTCAGCCTGATGGCGGGTAAACACTGATTTTCACC  <  AP009048/4544897‑4544839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.