| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4001811 | 94 (1.670) | 3 (0.060) | 3/92 | NT | 3.3% | coding (963/1500 nt) | pitA | phosphate transporter, low‑affinity |
| ? | AP009048 | = 4001825 | 91 (1.790) | coding (949/1500 nt) | pitA | phosphate transporter, low‑affinity | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4001738‑4001811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGA < AP009048/4001825‑4001756 ACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTC < 1:483892/71‑1 CAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTC > 1:3938242/1‑70 AGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAA > 1:2574021/1‑71 GCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTC < 1:2926852/61‑1 GCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCAGTGGTCAACCGCCTGAAAGGTATGTT < 1:1227105/69‑1 GCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACCGCCTGAAAGGTA < 1:54523/51‑1 CAGCTTGTCGTAGCTTTCCACATCGGTGGTCAACCGCCTGAAAGGTATGTTGA > 1:1907071/1‑53 TCAACCGCCTGAAAGGTATGTTGACCACCGATGTGG > 1:1506397/1‑36 CAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGC > 1:1905321/1‑70 CAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGC < 1:2421441/56‑1 CAACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCT > 1:4458436/1‑51 AACCGCCTGAAATGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCA < 1:906022/71‑1 AACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCA < 1:1595150/71‑1 AACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCA < 1:548140/71‑1 AACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCA < 1:1071929/71‑1 AACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCA < 1:4164260/71‑1 AACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGC < 1:99824/69‑1 AACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGC > 1:2265690/1‑69 AACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCA < 1:1100599/62‑1 AACCGCCTGAAAGGTATGTTGACCACCGATGTGGAA > 1:4016658/1‑36 ACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAG < 1:310589/71‑1 ACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAG < 1:10139/71‑1 ACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGC < 1:423143/68‑1 ACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGC > 1:2883064/1‑68 ACCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTA < 1:4401984/40‑1 CCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGA < 1:1041011/71‑1 CCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGC > 1:3867367/1‑67 CCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGC > 1:938700/1‑47 CCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTA > 1:2911677/1‑39 ACAGCATAATGCGGCGCATCTGGCTACGTTGATCAAGCGACAGCTTGTCGTAGCTTTCCACATCGGTGGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4001738‑4001811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaacCGCCTGAAAGGTATGTTGACCACCGATGTGGAAAGCTACGACAAGCTGTCGCTTGATCAACGTAGCCAGA < AP009048/4001825‑4001756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |