| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4261130 | 85 (1.510) | 3 (0.060) | 3/88 | NT | 4.2% | coding (426/609 nt) | lexA | DNA‑binding transcriptional repressor |
| ? | AP009048 | = 4261163 | 64 (1.320) | coding (459/609 nt) | lexA | DNA‑binding transcriptional repressor | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGTCGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4261055‑4261130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacggtAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTTTATGCACTGC < AP009048/4261163‑4261098 GATGTCGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTA < 1:4405935/71‑1 TGTCGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAAC > 1:2242452/1‑71 TGTCGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAA < 1:4451168/70‑1 TGTCGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAA < 1:392808/70‑1 TCGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGTCATTGCATAAAACTCAGGATGTACGTAACGG > 1:420387/1‑71 TCGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACG > 1:414292/1‑70 CGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACGGT > 1:3672665/1‑71 CGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACGGT > 1:2047250/1‑71 ATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCATTGCATAAAACTCAGGATGTACGTAACGG < 1:2797809/68‑1 ATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACGGT > 1:3549292/1‑69 TGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGT < 1:858312/62‑1 GATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACGGT < 1:3055000/63‑1 TGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTA < 1:1149316/45‑1 TGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTA < 1:1466185/45‑1 TGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACGGTAACTTCGTCATCAATACGTGCGAC > 1:2089573/1‑70 ACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAA < 1:1045848/37‑1 TTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACGGT < 1:1247965/39‑1 CTGGCAGTGCATAAAACTCAGGATGTACGTAACGGTAACTTCGTCATCAATACGTGCGACAACGACCTGA < 1:4092994/70‑1 CAGTGCATAAAACTCAGGATGTACGTAACGGTAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTT < 1:460602/71‑1 TAACGGTAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTTTATGCACT > 1:4286473/1‑71 TAACGGTAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTTTATGCA > 1:4011590/1‑69 AACGGTAACTTCGTCATCAATACGTGCGACAACGCCCTGACCGTTACGTACATCCTGAGTT > 1:1274657/1‑61 AACGGTAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTTTATGCACTG > 1:1083519/1‑71 AACGGTAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTTTATGC > 1:3976995/1‑67 AACGGTAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTTTAT > 1:4591875/1‑65 ACGGTAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAG < 1:2013657/58‑1 CGGTAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTTTATGCACTGC > 1:3316595/1‑70 TAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTT < 1:3064523/57‑1 TAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTA < 1:4501479/45‑1 GATGTCGATGAAAGATATCGGCATTATGGATGGTGACTTGCTGGCAGTGCATAAAACTCAGGATGTACGTAACGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4261055‑4261130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacggtAACTTCGTCATCAATACGTGCGACAACGACCTGACCGTTACGTACATCCTGAGTTTTATGCACTGC < AP009048/4261163‑4261098 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |