mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.0% | 69.6 / 33.3 | 61 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 30 (0.820) | 7 (0.210) | 7/252 | 3.1 | 19.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 32 (0.980) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 37 (1.010) | 3 (0.090) | 3/252 | 4.9 | 8.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 32 (0.980) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3224522 = | 46 (1.250) | 3 (0.080) | 3/276 | 5.3 | 6.4% | coding (1890/3093 nt) | ebgA | evolved beta‑D‑galactosidase, alpha subunit |
| ? | NC_000913 | 3224536 = | 43 (1.200) | coding (1904/3093 nt) | ebgA | evolved beta‑D‑galactosidase, alpha subunit | |||||
| * | ? | NC_000913 | = 2662366 | 35 (0.950) | 4 (0.110) | 3/270 | 5.3 | 12.1% | noncoding (58/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 2662476 | 25 (0.720) | noncoding (168/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 2662366 | 36 (0.980) | 3 (0.090) | 3/270 | 5.3 | 8.4% | noncoding (58/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 2662385 | 31 (0.890) | noncoding (77/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 1533706 | 47 (1.280) | 3 (0.090) | 3/272 | 5.3 | 6.0% | coding (146/570 nt) | yddH | flavin reductase like‑protein |
| ? | NC_000913 | = 1533713 | 49 (1.390) | coding (139/570 nt) | yddH | flavin reductase like‑protein | |||||
| * | ? | NC_000913 | 1512410 = | 39 (1.060) | 3 (0.080) | 3/276 | 5.3 | 7.3% | coding (757/1146 nt) | ydcS | putative ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1512451 = | 38 (1.060) | coding (798/1146 nt) | ydcS | putative ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1473285 = | 48 (1.300) | 4 (0.110) | 3/274 | 5.3 | 7.7% | pseudogene (2769/3497 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| ? | NC_000913 | 1473342 = | 49 (1.380) | pseudogene (2826/3497 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 3 (0.090) | 3/270 | 5.3 | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 377368 = | NA (NA) | 3 (0.090) | 3/270 | 5.3 | NA | noncoding (34/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 2139702 = | NA (NA) | noncoding (1/37 nt) | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||