New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	30 (0.820)	7 (0.210)	7/252	3.1	19.3%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	32 (0.980)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207675‑1207947                                                                                                                                   |                                                                                                                                               gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                    <  1:611641/143‑1 (MQ=255) aagcaGGGTCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                    <  1:519682/139‑1 (MQ=255)  agaTGGGGCGGTACGACTAGTTACTTACCGCACTTGGCGCGCTGCTGTTATGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                                   <  2:363493/143‑1 (MQ=18)         gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCAAACGGCTCCCGCAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTgcagcca                                                                                                                            >  2:442796/1‑141 (MQ=255)             cACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGc                                                                                                                        >  1:257103/1‑143 (MQ=255)                       tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCACGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCCCGAAAACCTTAGATTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                                              >  2:12319/1‑143 (MQ=255)                        acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                                             <  1:441204/143‑1 (MQ=255)                                          gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGACGCCCCGGGTTCATAGcga                                                                                           >  1:220861/1‑141 (MQ=255)                                                  tAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                                   <  1:182534/143‑1 (MQ=255)                                                    aggcgcgAGAATCCGTTTGGCGATATCAGATCGGGTGGCACTGTGCAATCGGCTCTCGACAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                 <  2:296525/140‑1 (MQ=37)                                                      ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATgc                                                                               >  1:321955/1‑142 (MQ=255)                                                        gCACGAAGCGGTTTGGCGTTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGTAGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATCCCGGTTATGAtt                                                                             <  2:207880/143‑1 (MQ=37)                                                         cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTtg                                                                            >  1:141484/1‑143 (MQ=255)                                                           aGAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                          <  1:105195/143‑1 (MQ=255)                                                            gAATCCGGTGGGCGATATCACATCGTATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                         <  2:250661/143‑1 (MQ=255)                                                               tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGCACCGGCTTCATCGCTATACCGGTTATGATTGGTGGTa                                                                      >  1:275352/1‑143 (MQ=255)                                                                   tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  <  1:657227/143‑1 (MQ=255)                                                                   gttGTCGATATCTAGTCGGATGCCATTTTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGAGCACAACTCAATGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  <  2:436994/142‑1 (MQ=255)                                                                    gtGGCCATATCGAATCGGATGGCACTATGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGACCAAAACTTTTTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                                 <  2:326234/142‑1 (MQ=38)                                                                           tatCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACTGGGTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                                          <  2:620746/143‑1 (MQ=255)                                                                            atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACGTTGGTTTGGGAGAAGGAGCAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                                         <  1:257626/143‑1 (MQ=255)                                                                            atCAAATCGGATGGCACGGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                                         <  1:442796/143‑1 (MQ=255)                                                                                     gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCa                                                <  1:615225/143‑1 (MQ=255)                                                                                          cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAATCAGTAATCATTCAGTggg                                           >  2:67818/1‑143 (MQ=255)                                                                                                     cGGCTTTCGAAAATCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATGAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                                <  1:512345/143‑1 (MQ=255)                                                                                                         tctcGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATCCAGCAACGGCTACATTAGGACGCAACGGTTTCATCGCTATACCGGTTATGGATGGTGGTATTGAGCAATCAGTAAGCAGTCAGCGTGGGTGGGAGGCCGCac                            >  2:145088/1‑142 (MQ=255)                                                                                                               aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATCGCCATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAACAGCAt                      >  2:186725/1‑143 (MQ=255)                                                                                                                 acgttGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCt                    >  1:447310/4‑143 (MQ=255)                                                                                                                   cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTCATGAGTGGTGGTATTGAGCAATCAGTCACCCTTCAGTGGGGGGGGAATGCCGCCAAAGCAACTGc                  >  2:311278/1‑143 (MQ=255)                                                                                                                                   gAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGGTGGa  >  1:473339/1‑143 (MQ=255)                                                                                                                                   |                                                                                                                                               GAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207675‑1207947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.