New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1473285 =	48 (1.300)	4 (0.110)	3/274	5.3	7.7%	pseudogene (2769/3497 nt)	ydbA	pseudogene, autotransporter homolog; interrupted by IS2 and IS30
	?	NC_000913	1473342 =	49 (1.380)					pseudogene (2826/3497 nt)	ydbA	pseudogene, autotransporter homolog; interrupted by IS2 and IS30
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTAAGCAACCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGT  >  NC_000913/1473143‑1473420                                                                                                                                               |                                                                                                                                        gtgaaGCAACCGCGTCAGTATGCTGGCAGATGCGGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTa                                                                                                                                         <  2:41120/140‑1 (MQ=255)      gCAACCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGAc                                                                                                                                    <  1:377588/143‑1 (MQ=255)        aaCCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGGCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCt                                                                                                                                  >  2:546016/1‑143 (MQ=255)        aaCCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTAACGACCt                                                                                                                                  >  2:370443/1‑143 (MQ=255)            gCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGc                                                                                                                              >  1:620003/1‑143 (MQ=255)                          gCAGATGCTGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTGGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGAt                                                                                                                <  2:662613/143‑1 (MQ=255)                          gCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGAt                                                                                                                <  1:508759/143‑1 (MQ=255)                          gCAGATGCCGCGCCGAAAGGGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGAt                                                                                                                <  2:488996/143‑1 (MQ=255)                          gCAGAGGCCGGGCGGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGGGAGAGGCGATCGGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCAGAGCAGAAGATGATGGAACTGAGCGAAAGCCAGACGAt                                                                                                                <  2:302530/143‑1 (MQ=255)                            acaTGCCGCGCCGAAAGTAGGGAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGa                                                                                                              <  1:186516/141‑1 (MQ=255)                                  cgcgCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTgg                                                                                                        >  1:656491/1‑143 (MQ=255)                                   gcgcCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTggc                                                                                                       >  1:346585/1‑142 (MQ=255)                                      tcGACAGTGGGTACCGGTCTGGCGTTCAACGTTGTCGCGAAAGGTGATCCGCGTGCCGAGTTAGCTAAAAATTCCGAATACGACATGCTGGCATTGCGTAACTCTATCGACCTGTGCGAAAGCCAGACGATGAGTCTGGAGTa                                                                                                    <  2:44453/142‑1 (MQ=255)                                      ccGAATGGGGGTAGCGGTCTGGCGTGCAACGTGGTCGCGAAAGGCGATCCGCGTGGCGAGTTAGGTAATAATACCGAGTACGACATGCTGGCATTGCGTAAAACGATCGACCTGCGCGAAAGCCAGACGATGAGTCTGGAGTa                                                                                                    <  2:662511/143‑1 (MQ=255)                                      ccGAAAGGGGGTAACGGTCTGGCGGTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTa                                                                                                    <  1:61233/143‑1 (MQ=255)                                       cGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACATGAGCGAAAGCGAGACGATACGTGTGGAGTaa                                                                                                   >  2:534869/1‑142 (MQ=255)                                        gAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACg                                                                                                  <  2:498174/143‑1 (MQ=255)                                            gcgggTAACGGTCTGGCGTCCAACGTTGTCGGGACAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTAt                                                                                              <  1:58630/141‑1 (MQ=255)                                             tGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTACAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGCGCACCGTATc                                                                                             >  2:355820/1‑143 (MQ=255)                                                   aCGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGt                                                                                       >  1:388941/1‑143 (MQ=255)                                                    cGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTATGGTATCGCTCGtc                                                                                      >  2:427295/1‑143 (MQ=255)                                                           gctttCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCAAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGGACGGTGTCGCTCGTCTCgatgg                                                                               >  1:351198/4‑143 (MQ=255)                                                             gTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTACCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCGCgacgggg                                                                             >  2:331864/1‑141 (MQ=255)                                                                cAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATTATTCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCgatggtgatg                                                                          <  1:457333/143‑1 (MQ=255)                                                                         cgcgAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGa                                                                 >  2:371034/1‑143 (MQ=255)                                                                               ggggtagccGCGTGCCGCGTTGGGTACGAATGCCGAAAACGCCATGCTGGCGTTGCGTAAGACGATCGACCTGAGCGAAAGCCAGACGATGGGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                           <  2:651617/136‑1 (MQ=255)                                                                               aggggggccGCGGGCCGAGTGAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGCCGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                           <  2:160752/136‑1 (MQ=255)                                                                               aGGCGATCCGCGGGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCgg                                                           <  1:625423/143‑1 (MQ=255)                                                                                 gCGATCCGCGTGCCGAGTTAGGTAATCATACCGAATACGACATGCTGGCTTTGCGTAGAACTATAGACCTGAGGGCAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGGTGGTGCGCGGCACGCGGGt                                                         >  1:626088/1‑143 (MQ=255)                                                                                    aTCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGGGCGGAAAGCGGGTGAt                                                      >  2:34240/1‑143 (MQ=255)                                                                                    aTCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCCCGTCTCGAAGGTCACGGTGCGCAGAAAGCcggacat                                                      >  2:221987/1‑139 (MQ=255)                                                                                     tCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCAGAGCGAAAACCAGACGATGAGTATGGAGTCCGGTATGGCCCGTGTCGATGGTGATGGTGAGCAGAAAGCGGGGGATa                                                     >  2:390182/1‑143 (MQ=255)                                                                                     tCCGCGTGCCGAGTTAGGTAATAATAACGAATACGACATGCTGGCATTGCGTAAAACTAACGACCTGAGCGAAAGCCAGACGATGAGACTGGAGTACGGCATCGAACGTCGCGATGGTGACGGGGCGCAGAAAGAGGGTggga                                                     >  2:357363/1‑140 (MQ=255)                                                                                     tCCGCGTGCAGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGAGTAAAACTATGGACCTGAGGGAAAGCGAGACGATGAGTATGGAGTACGGTATGGCTGGTCTCGATGGGGATGGTGAGAAGACAGAGGGGGAtt                                                     >  1:378251/1‑142 (MQ=255)                                                                                      ccGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGAGTGGAGTACGGTATCGCGCGTCTCGATGGTGAGGGTGCGAAGAAAGCGGGTGAtga                                                    >  1:16066/1‑141 (MQ=255)                                                                                       cgcggtccGAGGTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAAt                                                   <  1:276066/137‑1 (MQ=255)                                                                                           tGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCCGACGATGAGTCTGCAGTACGGTATCGCCCACCTCGATGGTGAGGGGGCGCAGACACCGCGGGATAATGGCg                                               >  2:64899/1‑143 (MQ=255)                                                                                                          taataCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTGGTCTCGATGGTGGTGGTGCGCAGAAAGCGGGTGATCATCGCGTTACAGGCGGTtatg                                >  1:630232/1‑142 (MQ=255)                                                                                                            ataCCGCATACGACAGGCTGGCACCGCGTAAGGCCATCGACCGTACCGAAAGCCAGGCGATGAGTCTGGAGCACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGc                              <  2:279777/143‑1 (MQ=255)                                                                                                             taCCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGAAGGCAGCGGGCCGCAGAACGCGGGAGAGAATGGCGTTACAGGCGGtgcgagcc                             >  2:505876/1‑136 (MQ=255)                                                                                                                       gACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACCGGCGTTTCTAGCCAGTTTTTTgg                   >  1:334795/1‑143 (MQ=255)                                                                                                                         cATGCTGGCATTGCGTAAAACTTTCGACCTTAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGcc                 >  1:479526/1‑143 (MQ=255)                                                                                                                              tGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGTGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGaaa            >  1:375926/1‑143 (MQ=255)                                                                                                                              tGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGGTATAGCCAGTGTTTTGGCCTGaca            >  1:29806/1‑141 (MQ=255)                                                                                                                                    tGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAg      <  1:331864/143‑1 (MQ=255)                                                                                                                                       gTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTTTAGCCGGTTTTTTGGCCTGAAACATCAGATg   >  1:170440/1‑143 (MQ=255)                                                                                                                                        tAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGt  >  1:297067/1‑143 (MQ=255)                                                                                                                                        tAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATAGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGt  >  1:297069/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                        GTTAAGCAACCGCTTTAGTATGCTGGCAGATGCCGCGCCGAAAGTGGGTAACGGTCTGGCGTTCAACGTTGTCGCGAAAGGCGATCCGCGTGCCGAGTTAGGTAATAATACCGAATACGACATGCTGGCATTGCGTAAAACTATCGACCTGAGCGAAAGCCAGACGATGAGTCTGGAGTACGGTATCGCTCGTCTCGATGGTGATGGTGCGCAGAAAGCGGGTGATAATGGCGTTACAGGCGGTTATAGCCAGTTTTTTGGCCTGAAACATCAGATGT  >  NC_000913/1473143‑1473420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.