| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2662366 | 35 (0.950) | 4 (0.110) | 3/270 | 5.3 | 12.1% | noncoding (58/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 2662476 | 25 (0.720) | noncoding (168/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCA > NC_000913/2662335‑2662616 | cGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCGGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCa > 1:86/1‑143 (MQ=255) ttCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCCTTACGCGTCGCACCCGGCCACg > 1:205915/1‑143 (MQ=255) cTGATGAGCCGCGTTACGCGTCGCCTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt < 2:562654/143‑1 (MQ=255) gcgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCCGCGTGCACGCCTTATCCGccc > 1:614771/1‑143 (MQ=255) gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGCATGCGGCGTGCACGCCTTATCCGACCTACgg > 1:394824/1‑143 (MQ=255) cAGGCGACGGCTGTCGGGTGCGGCGTGAACGCCGTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCt < 1:672052/143‑1 (MQ=255) atgCAACGGTTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCAGTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTg < 2:149363/141‑1 (MQ=255) gCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGtt < 1:321397/143‑1 (MQ=255) ggATCCGGCGTGAACGCCTTACCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCt < 1:48462/143‑1 (MQ=255) gcgTGAACGCCGTAGCCGAGCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCAGCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa < 2:369844/143‑1 (MQ=255) gTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGCTGCGGCGCGCGCGCCTTCTCCGCCCTCCCGCTCTCTCCACTCTTGGCCGCATAAGACg > 1:21697/1‑143 (MQ=14) gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGCCCTGCTCAGACGcc > 1:564989/1‑142 (MQ=255) aCGCCTTACCCGTCCTACGGTTCTCTTCACTGTAGTCCTGATAAGACGCATTTCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCAtt < 2:369797/143‑1 (MQ=14) cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTCCGGTTCTGTCCCCTGTAGGCCTGATCAGACGCATCAcgc > 1:518589/1‑143 (MQ=14) cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGCCTGTTGTGTGCCGCGTGTACGCCTTATCCGACCCACGGTACTGTTCACTATAGGCCGGAGAAGAAGCATGAcac > 2:79983/1‑141 (MQ=14) acccGGCCTGCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTc < 2:640923/141‑1 (MQ=12) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACgg < 1:136183/143‑1 (MQ=32) tGTTCTCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACAGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 2:540745/143‑1 (MQ=17) tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATCAGACGCATTACGCGTCTCAGCAGGCAACGGCt > 1:246822/1‑143 (MQ=12) cagtGTAGGCCTAATGAGACGCATTACGTGTCGCATTAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGTCCTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa < 2:57079/140‑1 (MQ=11) tgtgGGCCTGTGAGGACGCGTTACGGGTCGCGTCGGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc < 2:40444/143‑1 (MQ=11) ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTGATCCGACCTACGGTTCTGTTCACTGTGGGCCTGATAAGACGCATTACGCGTCGCATCAGGCGACGGCTGTTaaacgcgc > 2:69643/1‑136 (MQ=11) tAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGCTGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGATAc > 1:70711/1‑143 (MQ=255) cATTCCGCGTCGCCTCCGGCAACCGCCGTCGGGTGCGGCGTGAACGCCTTATCCGACCTCCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATCACGCGTCGTATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt < 2:11875/143‑1 (MQ=17) gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGACCTGATAAGACGCCATACGCGTCGCATCAGGCAACGGCGGTTATTCGGCCCTGTTACCGCTCTTctgcccct > 2:324482/1‑139 (MQ=14) gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGAAGGCATGATAAGACGCATTACGCGACGCATCAGGCAACGGCTGTTGTACGGACTTGTGCCCTATATTctgctaat > 2:52448/1‑140 (MQ=11) tgCATCTGGCACCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCa < 2:275164/142‑1 (MQ=255) | CGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCA > NC_000913/2662335‑2662616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |