mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 35 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 222382 | NA (NA) | 8 (0.140) | 6/282 | 5.1 | NA | noncoding (137/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 222386 | NA (NA) | noncoding (141/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 270406 | NA (NA) | 9 (0.160) | 6/288 | 5.2 | NA | noncoding (201/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270438 | NA (NA) | noncoding (233/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 224711 | NA (NA) | 7 (0.120) | 5/284 | 5.5 | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 224728 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 15586 | NA (NA) | 5 (0.090) | 5/286 | 5.5 | NA | noncoding (200/1345 nt) | IS186 | repeat region |
| ? | CP009273 | = 15595 | NA (NA) | noncoding (209/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 1413232 | 57 (0.970) | 4 (0.070) | 4/276 | 5.9 | 6.7% | coding (305/489 nt) | sieB | Rac prophage; phage superinfection exclusion protein |
| ? | CP009273 | = 1413238 | 58 (1.060) | coding (311/489 nt) | sieB | Rac prophage; phage superinfection exclusion protein | |||||
| * | ? | CP009273 | 377137 = | NA (NA) | 5 (0.090) | 4/278 | 5.9 | NA | coding (331/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | 377209 = | NA (NA) | coding (80/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | 270331 = | NA (NA) | 7 (0.130) | 4/278 | 5.9 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 4572987 | 71 (1.210) | 4 (0.070) | 4/284 | 6.0 | 5.5% | intergenic (‑122/+79) | hsdM/hsdR | DNA methyltransferase M/pseudogene, premature stop codon, host restriction; endonuclease R |
| ? | CP009273 | = 4573007 | 69 (1.230) | intergenic (‑142/+59) | hsdM/hsdR | DNA methyltransferase M/pseudogene, premature stop codon, host restriction; endonuclease R | |||||
| * | ? | CP009273 | = 4449189 | 60 (1.020) | 4 (0.070) | 4/284 | 6.0 | 6.2% | intergenic (+61/‑118) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) |
| ? | CP009273 | = 4449269 | 64 (1.140) | intergenic (+141/‑38) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) | |||||
| * | ? | CP009273 | = 2425786 | 49 (0.840) | 5 (0.090) | 4/286 | 6.0 | 8.7% | coding (636/1269 nt) | folC | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase |
| ? | CP009273 | = 2595732 | 57 (1.010) | coding (556/2019 nt) | hyfB | hydrogenase 4, membrane subunit | |||||