New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1413232	57 (0.970)	4 (0.070)	4/276	5.9	6.7%	coding (305/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
	?	CP009273	= 1413238	58 (1.060)					coding (311/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAG  >  CP009273/1413085‑1413377                                                                                                                                                    |                                                                                                                                                  aGATTATCGTTTTTGCCCTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCtg                                                                                                                                                  >  2:720933/1‑148 (MQ=255)          tttttGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGa                                                                                                                                         >  1:169012/1‑149 (MQ=255)                ccTTTTCTTTCGTGGTCGCCATTTTCTACTCATGGTTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCtt                                                                                                                                   <  2:671197/149‑1 (MQ=255)                  ttttCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttat                                                                                                                                 >  2:858372/1‑149 (MQ=255)                     tctttcGCGGTCGCTATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCCTTACTACCCGTGCATCGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTtattat                                                                                                                              <  2:732384/149‑1 (MQ=255)                      ctttcGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATCATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATc                                                                                                                             >  1:902007/1‑149 (MQ=255)                           gTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGCTTTCCTTAAAACAGGAAATCTTATTATCACTtc                                                                                                                        >  1:2343/1‑149 (MQ=255)                                cGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCtt                                                                                                                   <  1:194399/149‑1 (MQ=255)                                        ccgtctcAAGATTGCGGGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGGAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAAc                                                                                                           <  2:643443/146‑1 (MQ=255)                                         cTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAAcc                                                                                                          >  1:590313/1‑149 (MQ=255)                                            ctcAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCgg                                                                                                       >  1:431903/1‑149 (MQ=255)                                             tcAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGt                                                                                                      <  2:789575/149‑1 (MQ=255)                                             tcAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGt                                                                                                      <  1:518451/149‑1 (MQ=255)                                                cgATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGATTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTAt                                                                                                   <  2:782302/148‑1 (MQ=255)                                                      cGAGCACATATTCAAAAGCATTATTCATTGCTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTGAAACAGGAAATCTTATTGTGCCTTCTCCTTGCCGTAACCGCGTTATTcaaaa                                                                                             >  2:924518/1‑149 (MQ=255)                                                          cacaTATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTa                                                                                         <  1:956926/149‑1 (MQ=255)                                                                      aGCATTATTCATTACTACCAGGGCAACGAGTATCGCTCTGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGc                                                                             <  1:412967/149‑1 (MQ=255)                                                                      aGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTCACCCGGTTATGAAAACATTAGAACGGAAGGGc                                                                             >  2:215058/1‑149 (MQ=255)                                                                         attattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTAGTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGcatc                                                                          <  1:646032/149‑1 (MQ=255)                                                                                aTTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAAc                                                                   <  1:72516/149‑1 (MQ=255)                                                                                  tactacCAGAGCAACGAGTATTGCTGCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGACATCGTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACAt                                                                 <  1:846715/149‑1 (MQ=255)                                                                                      acCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCaga                                                             >  2:612055/1‑149 (MQ=255)                                                                                         agagCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTg                                                          >  1:344069/1‑149 (MQ=255)                                                                                          gagCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGa                                                         >  1:77333/1‑149 (MQ=255)                                                                                           agCAACGAGTATTGCTTCGTTTATGTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAATGGAAGGGCATCATTCAACATCAGAGTGAt                                                        <  1:632097/149‑1 (MQ=255)                                                                                                 gAGTTTTGCTTCGTTCATCTGAGAACGAAATCGATGGCTTGCATGGTTTCCTTAAAACAGGAAATCTTATTATCGCTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTCGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCa                                                  <  1:737473/149‑1 (MQ=255)                                                                                                   gTATTGCTTCTTTTATCTGAAAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCaaa                                                <  2:764521/149‑1 (MQ=255)                                                                                                      ttGCTTCGTTTATCTGAGAAAGAAATCGTTGTATTTAAAGATTTCCTTAAATCAGGAAATCTTATTATCACTTCTCCTTGCCGTGACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACCTCAGAATGATAGCGCAAAcgg                                             >  2:903361/1‑147 (MQ=255)                                                                                                      ttGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTg                                             <  1:858372/149‑1 (MQ=255)                                                                                                      ttGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTg                                             >  1:403891/1‑149 (MQ=255)                                                                                                        gCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTATCCTTGCGGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGtt                                           >  2:437043/1‑149 (MQ=255)                                                                                                         cTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTc                                          >  1:740818/1‑149 (MQ=255)                                                                                                         cTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTc                                          >  1:142869/1‑149 (MQ=255)                                                                                                          ttCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGttgt                                         >  2:85251/1‑147 (MQ=255)                                                                                                            cctttATATGAAAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGCAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCtta                                       <  2:79774/147‑1 (MQ=255)                                                                                                              tttATCTGAGATAGAAATCGTCGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCttatt                                     <  2:902007/149‑1 (MQ=255)                                                                                                              tttATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCttatt                                     <  1:547775/149‑1 (MQ=255)                                                                                                                tctccggtcaagaaaTCGCCGTATTTACAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTtattat                                   <  1:691061/140‑1 (MQ=255)                                                                                                                tctCTGACAAACAAATCGCTGTCTTCGAAGATTGCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTtattat                                   <  1:691004/147‑1 (MQ=255)                                                                                                                tagcTGAGAAAGAAATTGCTGTATTTAAAGATTTCCTTAATACAGGCAATTTTATTATCCCTTCTCACTGCCGTATCCCGATAATGAAAAAGTTAGGACGGATGTTCATCATTCAACATCAGATTTATAGCGCAAACTGTTCTtattat                                   <  2:275746/146‑1 (MQ=255)                                                                                                                tATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTtattat                                   <  1:927241/149‑1 (MQ=255)                                                                                                                 aTCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTAtc                                  <  1:86271/149‑1 (MQ=255)                                                                                                                     gagaAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACACGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCCGAAACTGTTCTTCTTACCTCGt                              >  2:503720/1‑149 (MQ=255)                                                                                                                     gagaAAGAAATCGATCTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGt                              <  2:608685/149‑1 (MQ=255)                                                                                                                               tCGCTGTATTTAAAGATTTCCTTAAAACATGAAATCTTATTCTCGAAAGTCCTTGCCGTAACCCGGTGATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGAGAGCGCAAACTGTTCTTATTATCTCGTCACCGaaaaa                    <  1:312084/149‑1 (MQ=255)                                                                                                                               tCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGaaaaa                    <  1:893291/149‑1 (MQ=255)                                                                                                                                 gCTGTATTTAACGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCACAATTATAGCTCAAACTGTTCTTATTATCTCGTCACCGAAAAATa                  <  1:704070/149‑1 (MQ=255)                                                                                                                                  cTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTCTGAAAAAATCAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATAc                 >  1:700150/1‑149 (MQ=255)                                                                                                                                  cTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATAc                 >  1:399117/1‑149 (MQ=255)                                                                                                                                   tGTATTTAAATATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCATGACGTAACCCGGTAATGAAAAAACTAGAACGGAAGTGCATCATGCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACt                <  1:37332/149‑1 (MQ=255)                                                                                                                                   tGTATTTAAAGATTTCCTTAAAACAGAAAAACTTATTATCACTTCTCCTTGCCGTAACCCGGTTATAAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAACGCAAACTAATATTAATAACTAGTAACCGaaaaaaatt                >  2:28683/1‑145 (MQ=255)                                                                                                                                       tttAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACTAAAAAATTCTCCCa            <  2:828677/149‑1 (MQ=255)                                                                                                                                            aGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAATTACTCCCATTTTa       >  2:505996/1‑149 (MQ=255)                                                                                                                                            aGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACAGAAAAATACTCTCATTTTa       >  2:506234/1‑149 (MQ=255)                                                                                                                                            aGATTTCCTAAAAACAGGAAATCTTATTATCACTTCTCCTGGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTa       <  1:880464/149‑1 (MQ=255)                                                                                                                                                 tCCTTAAAACTGGAAATCTTATTATCCCTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTTTTATCTCGTCACCGAAAAATACTCCCATTTTATGAAg  <  2:921265/149‑1 (MQ=255)                                                                                                                                                 tCCTTAAAACGGGAAATCCTATTTTCACTCCTCCGTGCCGTGACCCGGATACGAAAAACTTAGAACGGAAGTGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAg  <  1:79446/149‑1 (MQ=255)                                                                                                                                                 tCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAg  <  1:775799/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  AGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAG  >  CP009273/1413085‑1413377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.