New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1413232	57 (0.970)	4 (0.070)	4/276	5.9	6.7%	coding (305/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
	?	CP009273	= 1413238	58 (1.060)					coding (311/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTG  >  CP009273/1413094‑1413385                                                                                                                                                 |                                                                                                                                                    tttttGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGa                                                                                                                                                 >  1:169012/1‑149 (MQ=255)       ccTTTTCTTTCGTGGTCGCCATTTTCTACTCATGGTTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCtt                                                                                                                                           <  2:671197/149‑1 (MQ=255)         ttttCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttat                                                                                                                                         >  2:858372/1‑149 (MQ=255)            tctttcGCGGTCGCTATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCCTTACTACCCGTGCATCGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTtattat                                                                                                                                      <  2:732384/149‑1 (MQ=255)             ctttcGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATCATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATc                                                                                                                                     >  1:902007/1‑149 (MQ=255)                  gTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGCTTTCCTTAAAACAGGAAATCTTATTATCACTtc                                                                                                                                >  1:2343/1‑149 (MQ=255)                       cGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCtt                                                                                                                           <  1:194399/149‑1 (MQ=255)                               ccgtctcAAGATTGCGGGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGGAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAAc                                                                                                                   <  2:643443/146‑1 (MQ=255)                                cTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAAcc                                                                                                                  >  1:590313/1‑149 (MQ=255)                                   ctcAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCgg                                                                                                               >  1:431903/1‑149 (MQ=255)                                    tcAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGt                                                                                                              <  2:789575/149‑1 (MQ=255)                                    tcAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGt                                                                                                              <  1:518451/149‑1 (MQ=255)                                       cgATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGATTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTAt                                                                                                           <  2:782302/148‑1 (MQ=255)                                             cGAGCACATATTCAAAAGCATTATTCATTGCTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTGAAACAGGAAATCTTATTGTGCCTTCTCCTTGCCGTAACCGCGTTATTcaaaa                                                                                                     >  2:924518/1‑149 (MQ=255)                                                 cacaTATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTa                                                                                                 <  1:956926/149‑1 (MQ=255)                                                             aGCATTATTCATTACTACCAGGGCAACGAGTATCGCTCTGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGc                                                                                     <  1:412967/149‑1 (MQ=255)                                                             aGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTCACCCGGTTATGAAAACATTAGAACGGAAGGGc                                                                                     >  2:215058/1‑149 (MQ=255)                                                                attattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTAGTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGcatc                                                                                  <  1:646032/149‑1 (MQ=255)                                                                       aTTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAAc                                                                           <  1:72516/149‑1 (MQ=255)                                                                         tactacCAGAGCAACGAGTATTGCTGCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGACATCGTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACAt                                                                         <  1:846715/149‑1 (MQ=255)                                                                             acCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCaga                                                                     >  2:612055/1‑149 (MQ=255)                                                                                agagCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTg                                                                  >  1:344069/1‑149 (MQ=255)                                                                                 gagCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGa                                                                 >  1:77333/1‑149 (MQ=255)                                                                                  agCAACGAGTATTGCTTCGTTTATGTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAATGGAAGGGCATCATTCAACATCAGAGTGAt                                                                <  1:632097/149‑1 (MQ=255)                                                                                        gAGTTTTGCTTCGTTCATCTGAGAACGAAATCGATGGCTTGCATGGTTTCCTTAAAACAGGAAATCTTATTATCGCTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTCGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCa                                                          <  1:737473/149‑1 (MQ=255)                                                                                          gTATTGCTTCTTTTATCTGAAAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCaaa                                                        <  2:764521/149‑1 (MQ=255)                                                                                             ttGCTTCGTTTATCTGAGAAAGAAATCGTTGTATTTAAAGATTTCCTTAAATCAGGAAATCTTATTATCACTTCTCCTTGCCGTGACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACCTCAGAATGATAGCGCAAAcgg                                                     >  2:903361/1‑147 (MQ=255)                                                                                             ttGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTg                                                     >  1:403891/1‑149 (MQ=255)                                                                                             ttGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTg                                                     <  1:858372/149‑1 (MQ=255)                                                                                               gCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTATCCTTGCGGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGtt                                                   >  2:437043/1‑149 (MQ=255)                                                                                                cTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTc                                                  >  1:142869/1‑149 (MQ=255)                                                                                                cTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTc                                                  >  1:740818/1‑149 (MQ=255)                                                                                                 ttCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGttgt                                                 >  2:85251/1‑147 (MQ=255)                                                                                                   cctttATATGAAAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGCAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCtta                                               <  2:79774/147‑1 (MQ=255)                                                                                                     tttATCTGAGATAGAAATCGTCGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCttatt                                             <  2:902007/149‑1 (MQ=255)                                                                                                     tttATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCttatt                                             <  1:547775/149‑1 (MQ=255)                                                                                                       tctccggtcaagaaaTCGCCGTATTTACAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTtattat                                           <  1:691061/140‑1 (MQ=255)                                                                                                       tctCTGACAAACAAATCGCTGTCTTCGAAGATTGCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTtattat                                           <  1:691004/147‑1 (MQ=255)                                                                                                       tagcTGAGAAAGAAATTGCTGTATTTAAAGATTTCCTTAATACAGGCAATTTTATTATCCCTTCTCACTGCCGTATCCCGATAATGAAAAAGTTAGGACGGATGTTCATCATTCAACATCAGATTTATAGCGCAAACTGTTCTtattat                                           <  2:275746/146‑1 (MQ=255)                                                                                                       tATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTtattat                                           <  1:927241/149‑1 (MQ=255)                                                                                                        aTCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTAtc                                          <  1:86271/149‑1 (MQ=255)                                                                                                            gagaAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACACGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCCGAAACTGTTCTTCTTACCTCGt                                      >  2:503720/1‑149 (MQ=255)                                                                                                            gagaAAGAAATCGATCTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGt                                      <  2:608685/149‑1 (MQ=255)                                                                                                                      tCGCTGTATTTAAAGATTTCCTTAAAACATGAAATCTTATTCTCGAAAGTCCTTGCCGTAACCCGGTGATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGAGAGCGCAAACTGTTCTTATTATCTCGTCACCGaaaaa                            <  1:312084/149‑1 (MQ=255)                                                                                                                      tCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGaaaaa                            <  1:893291/149‑1 (MQ=255)                                                                                                                        gCTGTATTTAACGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCACAATTATAGCTCAAACTGTTCTTATTATCTCGTCACCGAAAAATa                          <  1:704070/149‑1 (MQ=255)                                                                                                                         cTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTCTGAAAAAATCAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATAc                         >  1:700150/1‑149 (MQ=255)                                                                                                                         cTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATAc                         >  1:399117/1‑149 (MQ=255)                                                                                                                          tGTATTTAAATATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCATGACGTAACCCGGTAATGAAAAAACTAGAACGGAAGTGCATCATGCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACt                        <  1:37332/149‑1 (MQ=255)                                                                                                                          tGTATTTAAAGATTTCCTTAAAACAGAAAAACTTATTATCACTTCTCCTTGCCGTAACCCGGTTATAAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAACGCAAACTAATATTAATAACTAGTAACCGaaaaaaatt                        >  2:28683/1‑145 (MQ=255)                                                                                                                              tttAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACTAAAAAATTCTCCCa                    <  2:828677/149‑1 (MQ=255)                                                                                                                                   aGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAATTACTCCCATTTTa               >  2:505996/1‑149 (MQ=255)                                                                                                                                   aGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACAGAAAAATACTCTCATTTTa               >  2:506234/1‑149 (MQ=255)                                                                                                                                   aGATTTCCTAAAAACAGGAAATCTTATTATCACTTCTCCTGGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTa               <  1:880464/149‑1 (MQ=255)                                                                                                                                      caccgtcaaaaCACGAAATCTTATTATCACTTCGCCTTGCCTTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGACAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACGCCCATTTTATGa            <  2:668149/142‑1 (MQ=255)                                                                                                                                        tCCTTAAAACTGGAAATCTTATTATCCCTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTTTTATCTCGTCACCGAAAAATACTCCCATTTTATGAAg          <  2:921265/149‑1 (MQ=255)                                                                                                                                        tCCTTAAAACGGGAAATCCTATTTTCACTCCTCCGTGCCGTGACCCGGATACGAAAAACTTAGAACGGAAGTGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAg          <  1:79446/149‑1 (MQ=255)                                                                                                                                        tCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAg          <  1:775799/149‑1 (MQ=255)                                                                                                                                               aaCAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTCTGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCt   >  1:540941/1‑149 (MQ=255)                                                                                                                                                aCAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTg  >  1:682167/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTG  >  CP009273/1413094‑1413385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.