New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 242578649 (0.840)5 (0.090) 4/286 6.0 8.7% coding (636/1269 nt) folC bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
?CP009273 = 2595732 57 (1.010)coding (556/2019 nt) hyfB hydrogenase 4, membrane subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTGTTGCGGCATTCGGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCAATACTGGTTACTACCGCG  >  CP009273/2425640‑2425933
                                                                                                                                                  |                                                                                                                                                   
gcTGTTGCGGCATTCGGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGATTAGTTCCACTCAACGCCCCGACGTTGTACCAGTGCACCTTTTTCATGCGCcac                                                                                                                                                   >  1:438087/1‑149 (MQ=255)
      gCGGCATTCGGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGGGCACCTTTTTCCTGCGCCCCATCAGc                                                                                                                                             >  2:784325/1‑149 (MQ=255)
        ggCCTTCGGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACCTCCGcca                                                                                                                                           >  2:165070/1‑147 (MQ=255)
         gCATTCGGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAAt                                                                                                                                          <  1:516679/149‑1 (MQ=255)
          cATTCGGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCCCATCAGCAATg                                                                                                                                         >  2:444570/1‑149 (MQ=255)
          cATTCGGTTGCGGGACAAGCGGCAACGGCAAATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATCATCGGTGCCGGAATAGTTCCGCTCAAAGCCGCGACGTTGTTAGCGTGGACCTGTTTCTTGCGCCGCATCCGCaacg                                                                                                                                         >  2:658822/1‑147 (MQ=255)
          cATTCCGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGACATCATCGTTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATg                                                                                                                                         <  2:105394/149‑1 (MQ=255)
              cGGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAg                                                                                                                                     <  2:456924/149‑1 (MQ=255)
               ggTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCCCATCAGCAATGGTAGa                                                                                                                                    >  1:345686/1‑149 (MQ=255)
                gTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGaa                                                                                                                                   >  2:130000/1‑149 (MQ=255)
                 tggCGGGCCACGGGGCAACGGCAGATTTTCCGACGTGCCGTGAGCAACGCAAACAGCCGAGGCATGATCGGTGACGGAATAGTTCCACTCCACGCTCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAg                                                                                                                                  <  2:527395/147‑1 (MQ=255)
                      ggACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTCACAGGCAtt                                                                                                                             >  1:173965/1‑149 (MQ=255)
                          aaGCGGCAACGGCAGATTTTCCAGCTTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCGGCAATGGTAGAAGGCATTTCCg                                                                                                                         >  1:478932/1‑149 (MQ=255)
                                 aaCGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCAcc                                                                                                                  <  2:839572/149‑1 (MQ=255)
                                   ctgCAGATTCTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGa                                                                                                                <  1:597904/147‑1 (MQ=255)
                                   cGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGGGACGGAATAGTTCCACTCAACACCACGACGTTGTAACAGTGCACCTTTTTCCTCCGCCACAGCAGCAATGGTAGGAGGCGCTAGCGGCTCACCGa                                                                                                                >  2:511597/1‑149 (MQ=255)
                                    ggCAGATTTTCCAGGGTGCCGGGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGAc                                                                                                               <  2:553757/149‑1 (MQ=255)
                                       aGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAAt                                                                                                            <  2:335477/149‑1 (MQ=255)
                                        gATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCTCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAAtt                                                                                                           <  1:680894/149‑1 (MQ=255)
                                            ttCCGGCGTGCGGTGGGCATGGTGAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGCAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCg                                                                                                       <  2:608320/149‑1 (MQ=255)
                                                    tGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCg                                                                                               >  1:74016/1‑149 (MQ=255)
                                                        gttgccATCGCTTACCTCCCAGTCATGATCGGGGTCGGAATAGTTCCACTCCACGCCCCGACGTTGTAACAGTGCACCTCTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGc                                                                                           <  2:420774/144‑1 (MQ=255)
                                                         tgggCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCTCTCAGCGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGACGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCg                                                                                          <  2:476409/146‑1 (MQ=255)
                                                              aTCGCTAACCGCCCAGTCATGATCGGTGACGGAATAGTTCCACCCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGa                                                                                     <  2:58595/149‑1 (MQ=255)
                                                               tCGCTAAACGCCCAGTCATGATCTGTGACGAAATAGTTACACTCAACTCCCCGTCGTTTTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGTTATGATGCTTTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGAt                                                                                    <  2:701473/149‑1 (MQ=255)
                                                                 gCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGc                                                                                  <  1:166398/149‑1 (MQ=255)
                                                                     aaCGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGc                                                                              >  1:460123/1‑149 (MQ=255)
                                                                             gtactgctCGGTGACGGAACCGCTCCACTCAACGCCCCGACGTTGTAACACTGCACCGTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTcgc                                                                      <  2:497771/142‑1 (MQ=255)
                                                                               cATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGCCGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGa                                                                    <  2:172883/149‑1 (MQ=255)
                                                                                   aTCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGGGCACCTTTTTCCTGCGCCGCACCCGCAATGGTAGAAGGCATTTCCGGCTCACCGACAAGTGCCGGTTTTTCGCCGCGGAAGATGCCGGCTCTCTCGCCACCaa                                                                >  2:768402/1‑149 (MQ=255)
                                                                                         gACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACttt                                                          <  2:74016/149‑1 (MQ=255)
                                                                                          ccGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGGGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTc                                                         <  1:267966/148‑1 (MQ=255)
                                                                                            ggAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGGTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTcgc                                                       >  1:124048/1‑149 (MQ=255)
                                                                                                     ccACTCAACGCCCCGACGTTGTAACAGTGTAGCTGTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGAc                                              <  2:677407/149‑1 (MQ=255)
                                                                                                     ccACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTGTTCGCTGCGGAAGATGCCTGCTTTCTCGCGCCCAGTACTTTCGCGATCTGGAc                                              >  2:14021/1‑149 (MQ=255)
                                                                                                         tCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCCACTAAGTCTTGGTGGATTGCATTCCCGGCTTAGCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACccag                                          <  1:418432/149‑1 (MQ=255)
                                                                                                              gCCCCGACGTTGTAACAGTGCAGCTTTTTCCTGCGCCACATCAGGAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTTCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGt                                     <  1:796362/149‑1 (MQ=255)
                                                                                                                cccGACGTTGTAACAGTGCACCTTTTTTTTTTTTTTTTTAAGCAATGGTGGAAGACATTTCTGGGTCATGGGCACTTGGCGGTTTTTCGCTGCGTTCTATGCCTGCTTTCTCGCGACCGATACTTTCGCGCTCTGTTCCCTGCCCGTcc                                   >  2:225833/1‑148 (MQ=255)
                                                                                                                cccGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCACTGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCg                                   <  2:72340/149‑1 (MQ=255)
                                                                                                                  ccaCGTTGTAACAGTGCACCGTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCTGCCACTCGGt                                 <  2:328609/147‑1 (MQ=255)
                                                                                                                        tGTACCAGTGCACCTTTTTCCTGCTCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATc                           <  1:765129/149‑1 (MQ=255)
                                                                                                                         gTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATcc                          >  1:95606/1‑149 (MQ=255)
                                                                                                                              aGTGCACC‑TTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCTACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCa                    <  1:71748/149‑1 (MQ=255)
                                                                                                                              aGTGCACC‑TTGTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCTACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCa                    <  1:71743/149‑1 (MQ=255)
                                                                                                                                     cTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATACAGCGCAATCCTg              >  1:491500/1‑149 (MQ=255)
                                                                                                                                       ttttCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCAATACTGGt            <  2:345686/149‑1 (MQ=255)
                                                                                                                                       ttttCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCAATACTGGt            <  2:301188/149‑1 (MQ=255)
                                                                                                                                        tttCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCCGCCAGTCGGTATGATCCAGCGCAATACCGGtt           >  2:388002/1‑149 (MQ=255)
                                                                                                                                        tttCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCACACGGTATGATCCAGCGCAATACTCGtt           >  2:387869/1‑149 (MQ=255)
                                                                                                                                              gcgcCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCAATACTGGTTACTAcc     <  1:173746/149‑1 (MQ=255)
                                                                                                                                                cccACATCCGCAATGGTAGACGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCAATACTGGTTACTACcgc   <  2:190227/148‑1 (MQ=255)
                                                                                                                                                 ccACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCAATACTGGTTACTACcgcg  >  1:878046/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
GCTGTTGCGGCATTCGGTTGCGGGACAAGCGGCAACGGCAGATTTTCCAGCGTGCCGTGAGCATCGCTAAACGCCCAGTCATGATCGGTGACGGAATAGTTCCACTCAACGCCCCGACGTTGTAACAGTGCACCTTTTTCCTGCGCCACATCAGCAATGGTAGAAGGCATTTCCGGCTCACCGACAATTGCCGGTTTTTCGCTGCGGAAGATGCCTGCTTTCTCGCGACCAATACTTTCGCGATCTGGACCCAGCCAGTCGGTATGATCCAGCGCAATACTGGTTACTACCGCG  >  CP009273/2425640‑2425933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.