mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 755,335 | 0 | T | . | 64.0% | 72.6 / 185.5 | 100 | coding (159/390 nt) | sdhC | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| * | NC_000913 | 4,182,938 | 0 | A | C | 60.3% | 114.0 / 127.8 | 121 | E565A (GAA→GCA) | rpoB | RNA polymerase, beta subunit |
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.2% | 140.0 / 115.9 | 122 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 757,516 | 0 | G | A | 33.0% | 103.9 / 75.9 | 88 | R537H (CGT→CAT) | sdhA | succinate dehydrogenase, flavoprotein subunit |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 34 (0.310) | 19 (0.190) | 18/244 | 3.3 | 32.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 49 (0.500) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 3324951 | 129 (1.170) | 10 (0.100) | 9/256 | 5.2 | 7.5% | intergenic (‑40/+50) | folP/ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| ? | NC_000913 | = 3324959 | 126 (1.230) | intergenic (‑48/+42) | folP/ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo | |||||
| * | ? | NC_000913 | = 4168568 | 162 (1.470) | 8 (0.080) | 7/262 | 5.8 | 5.0% | intergenic (+121/‑73) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4168572 | 153 (1.460) | intergenic (+125/‑69) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 114505 | 123 (1.120) | 5 (0.050) | 5/252 | 6.3 | 4.2% | intergenic (+18/+17) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| ? | NC_000913 | = 114511 | 116 (1.150) | intergenic (+24/+11) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein | |||||
| * | ? | NC_000913 | 2756102 = | 155 (1.410) | 5 (0.050) | 5/254 | 6.4 | 3.5% | intergenic (+724/‑57) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase |
| ? | NC_000913 | 2756141 = | 134 (1.320) | intergenic (+763/‑18) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | NC_000913 | 4205219 = | 131 (1.190) | 5 (0.050) | 5/262 | 6.5 | 4.1% | coding (713/1290 nt) | purD | phosphoribosylglycinamide synthetase phosphoribosylamine‑glycine ligase |
| ? | NC_000913 | 4205254 = | 112 (1.070) | coding (678/1290 nt) | purD | phosphoribosylglycinamide synthetase phosphoribosylamine‑glycine ligase | |||||
| * | ? | NC_000913 | = 4168579 | 153 (1.390) | 8 (0.080) | 5/262 | 6.5 | 5.2% | intergenic (+132/‑62) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4209963 | NA (NA) | intergenic (+114/‑80) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 2501931 = | 100 (0.910) | 5 (0.050) | 5/274 | 6.6 | 4.4% | coding (802/858 nt) | ypdC | putative DNA‑binding protein |
| ? | NC_000913 | 2501961 = | 116 (1.060) | coding (832/858 nt) | ypdC | putative DNA‑binding protein | |||||
| * | ? | NC_000913 | 303617 = | 143 (1.300) | 4 (0.040) | 4/250 | 6.7 | 2.9% | intergenic (+12/+236) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913 | 303650 = | 140 (1.400) | intergenic (+45/+203) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913 | 3897448 = | 182 (1.650) | 4 (0.040) | 4/260 | 6.8 | 2.4% | intergenic (+9/‑58) | yieH/cbrB | phosphoenolpyruvate and 6‑phosphogluconate phosphatase/PRK09823 family inner membrane protein, creBC regulon |
| ? | NC_000913 | 3897501 = | 155 (1.490) | intergenic (+62/‑5) | yieH/cbrB | phosphoenolpyruvate and 6‑phosphogluconate phosphatase/PRK09823 family inner membrane protein, creBC regulon | |||||