New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2756102 =	155 (1.410)	5 (0.050)	5/254	6.4	3.5%	intergenic (+724/‑57)	smpB/intA	tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase
	?	NC_000913	2756141 =	134 (1.320)					intergenic (+763/‑18)	smpB/intA	tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAGAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2756258‑2756102 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgggcctaAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTG  >  NC_000913/2756141‑2756286                                                                                                                                                                                                                                                                                                                 ACAGAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGT                                                                                                                                                            <  1:194091/149‑1  CAGAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGTAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTT                                                                                                                                                           >  7:78274/1‑149    GAGTAATCCCGGCACCGTCATAAAGCTGGTAATCGGCAGCTTTAGGTTGGGCGGCTTTGATTTCCTTATAAGTTACAGGCTTGGTTTTTCTTGACATTTGGCGTCTCACTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGG                                                                                                                                                         <  5:219579/149‑1    GAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTCGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCGGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGG                                                                                                                                                         >  6:245561/1‑149      GTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGC                                                                                                                                                       <  2:240192/149‑1       TAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTACGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGTGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGCC                                                                                                                                                      >  7:335407/1‑149                             CTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGC                                                                                                                                                       <  6:216809/126‑1                             CTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGC                                                                                                                                                       >  5:216809/1‑126                                  AATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTG                                                                                                                                                          >  8:210492/1‑118                                  AATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTG                                                                                                                                                          <  7:210492/118‑1                                                                                                                 TGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCCGGGAGACTCCCCATGGCAAGAACAACCAAGCCGTTAACTGATACGGAAATCAACGCCGCCCACCCTAACGATGCCGATTACCAGCTTTAGGACGGTGA                                            >  5:242297/1‑149                                                                                                                 TGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTG                                                                                                                                                          <  8:64023/39‑1                                                                                                                          GCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAA                                                                                              >  3:175018/1‑90                                                                                                                          GCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCAGTTAACTGATACGGAA                                                                                              <  4:175018/90‑1                                                                                                                           CCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACT                                  >  6:45038/1‑149                                                                                                                              AACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTG                               <  5:45038/149‑1                                                                                                                                                   CGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGT          <  6:444204/149‑1                                                                                                                                                    GTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAACGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGT          >  5:371496/1‑148                                                                                                                                                        GGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTG                               >  4:92990/1‑123                                                                                                                                                        GGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTG                               <  3:92990/123‑1                                                                                                                                                         GCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTT    >  7:280813/1‑149                                                                                                                                                          CCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCA            <  4:239171/140‑1                                                                                                                                                          CCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCA            >  3:239171/1‑140                                                                                                                                                           CTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTG  <  3:156396/149‑1                                                                                                                                                             AAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTC                    >  7:294865/1‑129                                                                                                                                                             AAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTC                    <  8:294865/129‑1                                                                                                                                                                                                                                                                                                                 ACAGAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2756258‑2756102 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgggcctaAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTG  >  NC_000913/2756141‑2756286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.