mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 756,736 | 0 | C | A | 43.2% | 17.4 / 56.0 | 44 | A277E (GCG→GAG) | sdhA | succinate dehydrogenase, flavoprotein subunit |
| * | NC_000913 | 4,220,009 | 0 | G | T | 35.3% | 47.8 / 27.1 | 34 | V472F (GTT→TTT) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.7% | 69.6 / 18.1 | 38 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,591,498 | 0 | T | A | 21.4% | 87.3 / 20.2 | 42 | intergenic (‑219/‑159) | yjiY/tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| * | NC_000913 | 4,591,499 | 0 | C | T | 21.4% | 82.4 / 17.9 | 42 | intergenic (‑220/‑158) | yjiY/tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| * | NC_000913 | 4,591,500 | 0 | A | G | 21.4% | 79.0 / 18.3 | 42 | intergenic (‑221/‑157) | yjiY/tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| * | NC_000913 | 4,591,501 | 0 | T | A | 21.4% | 87.8 / 20.0 | 42 | intergenic (‑222/‑156) | yjiY/tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| * | NC_000913 | 3,423,405 | 0 | A | G | 20.6% | 70.8 / 12.1 | 35 | intergenic (+211/+18) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 832,364 | 0 | A | G | 20.0% | 62.7 / 10.5 | 32 | intergenic (+128/+104) | rhlE/ybiA | ATP‑dependent RNA helicase/DUF1768 family protein |
| Marginal new junction evidence (lowest skew 10 of 49 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1132795 = | 32 (0.840) | 6 (0.170) | 6/252 | 3.7 | 16.6% | coding (222/1209 nt) | flgE | flagellar hook protein |
| ? | NC_000913 | 1132842 = | 30 (0.830) | coding (269/1209 nt) | flgE | flagellar hook protein | |||||
| * | ? | NC_000913 | 812959 = | 41 (1.070) | 6 (0.170) | 5/240 | 3.9 | 14.0% | intergenic (+12/‑567) | bioD/uvrB | dethiobiotin synthetase/exision nuclease of nucleotide excision repair, DNA damage recognition component |
| ? | NC_000913 | 813011 = | 37 (1.070) | intergenic (+64/‑515) | bioD/uvrB | dethiobiotin synthetase/exision nuclease of nucleotide excision repair, DNA damage recognition component | |||||
| * | ? | NC_000913 | 726676 = | 20 (0.520) | 5 (0.140) | 5/256 | 4.1 | 17.2% | coding (361/2049 nt) | kdpB | potassium translocating ATPase, subunit B |
| ? | NC_000913 | 726726 = | 29 (0.790) | coding (311/2049 nt) | kdpB | potassium translocating ATPase, subunit B | |||||
| * | ? | NC_000913 | = 3858205 | 26 (0.680) | 4 (0.120) | 4/240 | 4.3 | 13.0% | coding (200/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | = 3858228 | 30 (0.870) | coding (177/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | 2729475 = | 23 (0.600) | 4 (0.110) | 4/246 | 4.4 | 19.4% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 12 (0.340) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 25 (0.650) | 4 (0.110) | 4/246 | 4.4 | 16.0% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 19 (0.540) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 972559 = | 35 (0.920) | 4 (0.110) | 4/246 | 4.4 | 11.2% | coding (808/894 nt) | ycbJ | protein kinase‑like domain protein |
| ? | NC_000913 | 972607 = | 31 (0.880) | coding (856/894 nt) | ycbJ | protein kinase‑like domain protein | |||||
| * | ? | NC_000913 | 3514835 = | 40 (1.050) | 4 (0.110) | 4/252 | 4.5 | 10.0% | coding (225/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase |
| ? | NC_000913 | 3514868 = | 34 (0.940) | coding (192/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | NC_000913 | 3307012 = | 42 (1.100) | 4 (0.110) | 4/252 | 4.5 | 8.6% | coding (849/1890 nt) | deaD | ATP‑dependent RNA helicase |
| ? | NC_000913 | 3307049 = | 45 (1.240) | coding (812/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 3242106 = | 36 (0.940) | 4 (0.110) | 4/248 | 4.5 | 9.9% | coding (1209/1488 nt) | uxaA | altronate hydrolase |
| ? | NC_000913 | 3242168 = | 39 (1.100) | coding (1147/1488 nt) | uxaA | altronate hydrolase | |||||