New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3514835 =	40 (1.050)	4 (0.110)	4/252	4.5	10.0%	coding (225/678 nt)	rpe	D‑ribulose‑5‑phosphate 3‑epimerase
	?	NC_000913	3514868 =	34 (0.940)					coding (192/678 nt)	rpe	D‑ribulose‑5‑phosphate 3‑epimerase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACAGCCATTTTCTTTAATCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATCCATGACGTCAAAATGCACGACATCAGCGCCAGCTGCCAGGGCTTTTGCGG  >  NC_000913/3514726‑3514995                                                                                                                                               |                                                                                                                                tACAGCCATTTTCTTTAATCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGc                                                                                                                            <  1:90865/148‑1 (MQ=255) tACAGCCATTTTCTTTAATCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGc                                                                                                                            <  1:93643/148‑1 (MQ=255)    aGCCATTTTCTTTAATCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGt                                                                                                                         >  3:157064/1‑148 (MQ=255)     gCCATTTTCTTTAATCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACAAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACAATCAGGTGTACGTCGATAGGGGCGGTaa                                                                                                                       >  3:52132/1‑149 (MQ=255)          tttCTTTAATCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCa                                                                                                                  >  5:128347/1‑149 (MQ=255)                tAATCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTa                                                                                                            >  3:95684/1‑149 (MQ=255)                  aTCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACg                                                                                                          >  1:105223/1‑149 (MQ=255)                     aGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCaa                                                                                                       <  5:11675/149‑1 (MQ=255)                      gTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAg                                                                                                      <  6:60684/149‑1 (MQ=255)                      gTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAg                                                                                                      <  4:95684/149‑1 (MQ=255)                                      aaCATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTg                                                                                      <  2:105223/149‑1 (MQ=255)                                               ggAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATc                                                                              <  8:18009/148‑1 (MQ=255)                                                gAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATa                                                                                                                >  3:48230/1‑113 (MQ=255)                                                gAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATa                                                                                                                <  4:48230/113‑1 (MQ=255)                                                         ggATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTgg                                                                    >  5:129877/1‑148 (MQ=255)                                                          gATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTggg                                                                   >  6:21133/1‑148 (MQ=255)                                                          gATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTgg                                                                    <  2:63005/147‑1 (MQ=255)                                                          gATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGa                                                                  <  4:157064/149‑1 (MQ=255)                                                            tGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGaa                                                                 >  1:134477/1‑148 (MQ=255)                                                             gAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATATACGGGTTTAACAATCAGTTGTAAGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACa                                                               >  1:105729/1‑149 (MQ=255)                                                               aaGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTTATGCCATAGtt                                                                                                             <  6:146260/101‑1 (MQ=255)                                                               aaGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTGATGCCATAGtt                                                                                                             >  5:146260/1‑101 (MQ=255)                                                                aGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAg                                                            <  6:79935/149‑1 (MQ=255)                                                                 ggTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGt                                                           <  6:128347/149‑1 (MQ=255)                                                                  gTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTg                                                          <  6:129877/149‑1 (MQ=255)                                                                   tAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTgg                                                         <  2:134477/149‑1 (MQ=255)                                                                          gCTGGAACCAGCTGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATAGTCAGATTGGGAAAATAGTGGTTATcc                                                   <  4:52132/148‑1 (MQ=255)                                                                              gCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGTTGTACGTCGATAGGGGCGTTAATGACATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATGGTGGTTATCCATGa                                               <  2:105729/148‑1 (MQ=255)                                                                                aCCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATcc                                                   >  5:75882/1‑142 (MQ=255)                                                                                aCCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATcc                                                   <  6:75882/142‑1 (MQ=255)                                                                                                                       tttCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATCCATGACGTCAAAATGCACGACATCAGCGCCAGCTGCCAGGGCTTTTg     <  5:21133/149‑1 (MQ=255)                                                                                                                             cATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATCCATGACGTCAAAATGCAc                                  <  5:150538/114‑1 (MQ=255)                                                                                                                             cATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATCCATGACGTCAAAATGCAc                                  >  6:150538/1‑114 (MQ=255)                                                                                                                                  ggTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTc                                                                                                >  2:35758/1‑47 (MQ=255)                                                                                                                                         gTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATCCATGACGTCAAAATGCACGACATCAGCGCCAGCTGCCAGGGCTTTTGCgg  >  7:7386/1‑134 (MQ=255)                                                                                                                                         gTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATCCATGACGTCAAAATGCACGACATCAGCGCCAGCTGCCAGGGCTTTTGCgg  <  8:7386/134‑1 (MQ=255)                                                                                                                                               |                                                                                                                                TACAGCCATTTTCTTTAATCAGTTGCAGCGTGCGGTCAACATGCTCGGAGGCTTCTGGATGAAAGGTAATGATGCTGGCACCAGCGGCAGCGAAATCAGGCACAATGCGATCGACGGGTTTCACCATCAGGTGTACGTCGATAGGGGCGGTAATGCCATAGTTACGCAAGGATTTCAGCACCATTGGCCCAATCGTCAGATTGGGAACATAGTGGTTATCCATGACGTCAAAATGCACGACATCAGCGCCAGCTGCCAGGGCTTTTGCGG  >  NC_000913/3514726‑3514995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.