Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
16 2 3
17 2 3
18 2 3
19 2 3
20 2 3
21 2 3
7 13 19

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 25 59
Multiple Base Substitutions 0 0
Deletions 2 3
Insertions 1 1
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 28 63

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 98 0 100.4 3500656 98.3% 3441144 136.1
A16 F21 I1 R1 2 0 118.2 4170332 98.4% 4103606 134.5
A16 F66 I0 R1 194 0 85.9 3684066 95.6% 3521967 135.3
A16 F66 I1 R1 2 0 86.9 3420544 86.7% 2965611 136.8
A17 F22 I1 R1 3 0 121.0 4271178 98.4% 4202839 134.4
A17 F68 I0 R1 186 0 97.3 3975828 96.1% 3820770 135.7
A17 F68 I1 R1 3 0 88.7 3386380 89.7% 3037582 135.1
A18 F24 I1 R1 3 0 100.0 3521884 98.6% 3472577 134.5
A18 F70 I0 R1 122 0 109.7 3991956 96.1% 3836269 135.6
A18 F70 I1 R1 3 0 80.9 3131058 87.9% 2752199 137.2
A19 F23 I1 R1 2 0 104.5 3671088 98.6% 3619692 134.5
A19 F65 I0 R1 149 0 85.5 3158558 96.7% 3054325 135.7
A19 F65 I1 R1 2 0 104.5 3923626 91.5% 3590117 135.8
A20 F22 I1 R1 1 0 113.1 3965964 98.5% 3906474 135.0
A20 F67 I0 R1 178 0 37.6 1401316 95.7% 1341059 135.6
A20 F67 I1 R1 2 0 103.4 4049330 85.9% 3478374 139.1
A21 F22 I1 R1 2 0 128.0 4458054 98.7% 4400099 135.7
A21 F67 I0 R1 207 0 46.5 1760628 95.3% 1677878 135.4
A21 F67 I1 R1 2 0 100.7 3902392 88.6% 3457519 135.5

Mutation Needle Plot

Mutation Targets

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