mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 180,035 | C→T | 7.5% | T362T (ACC→ACT) | cdaR → | carbohydrate diacid regulon transcriptional regulator; autoregulator |
| RA | 221,373:1 | +G | 6.0% | noncoding (1116/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,380 | T→A | 5.7% | noncoding (1123/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,402 | A→C | 5.3% | noncoding (1145/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,407 | A→T | 5.2% | noncoding (1150/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,412 | A→T | 5.0% | noncoding (1155/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,420 | A→G | 5.5% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 8.3% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 8.7% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,455 | G→A | 13.4% | noncoding (1198/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,464 | G→C | 11.6% | noncoding (1207/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,471 | C→T | 13.5% | noncoding (1214/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 242,746 | C→A | 5.0% | D82Y (GAT→TAT) | dinJ ← | antitoxin of YafQ‑DinJ toxin‑antitoxin system |
| RA | 345,428 | T→C | 5.8% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 407,994 | C→T | 5.1% | intergenic (‑57/+69) | araJ ← / ← sbcC | arabinose‑inducible putative transporter, MFS family/exonuclease, dsDNA, ATP‑dependent |
| RA | 418,995 | T→G | 10.1% | L341R (CTG→CGG) | malZ → | maltodextrin glucosidase |
| RA | 461,228 | A→G | 5.4% | L514P (CTG→CCG) | ybaE ← | putative ABC superfamily transporter periplasmic‑binding protein |
| RA | 462,544 | C→T | 9.1% | S75S (TCG→TCA) | ybaE ← | putative ABC superfamily transporter periplasmic‑binding protein |
| RA | 468,294 | G→T | 5.4% | A81S (GCT→TCT) | glnK → | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| RA | 524,606 | A→G | 5.2% | intergenic (+20/‑350) | ybbD → / → ylbI | pseudogene/pseudogene, Rhs family protein |
| RA | 596,078 | C→T | 9.1% | R637W (CGG→TGG) | cusA → | copper/silver efflux system, membrane component |
| RA | 646,936 | C→A | 8.5% | S126I (AGC→ATC) | citC ← | [citrate [pro‑3S]‑lyase] ligase |
| RA | 675,003 | G→T | 9.8% | A14S (GCG→TCG) | ybeU → | DUF1266 family protein |
| RA | 710,564 | C→T | 6.9% | I517I (ATC→ATT) | pgm → | phosphoglucomutase |
| RA | 732,499 | T→C | 7.7% | pseudogene (219/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 761,369 | C→A | 8.1% | intergenic (‑38/‑71) | mngR ← / → mngA | Transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon/fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 917,900 | C→A | 5.0% | Q49H (CAG→CAT) | cspD ← | inhibitor of DNA replication, cold shock protein homolog |
| RA | 978,578 | C→T | 6.1% | G16G (GGC→GGT) | ycbK → | M15A protease‑related family periplasmic protein |
| RA | 1,019,261 | C→A | 6.2% | G27* (GGA→TGA) | yccS ← | putative transporter, FUSC superfamily inner membrane protein, tandem domains |
| RA | 1,092,976 | T→C | 6.6% | intergenic (+691/+45) | ycdU → / ← serX | putative inner membrane protein/tRNA‑Ser |
| RA | 1,094,045 | A→G | 6.1% | D235G (GAC→GGC) | ghrA → | glyoxylate/hydroxypyruvate reductase A |
| RA | 1,098,214 | G→T | 10.8% | R147S (CGT→AGT) | csgD ← | csgBAC operon transcriptional regulator |
| RA | 1,174,058 | G→T | 5.0% | G4W (GGG→TGG) | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,203,935 | A→G | 5.5% | E116E (GAA→GAG) | tfaP → | e14 prophage; uncharacterized protein |
| RA | 1,203,941 | T→C | 6.4% | V118V (GTT→GTC) | tfaP → | e14 prophage; uncharacterized protein |
| RA | 1,203,947 | A→T | 7.0% | T120T (ACA→ACT) | tfaP → | e14 prophage; uncharacterized protein |
| RA | 1,203,977 | G→T | 8.8% | T130T (ACG→ACT) A200E (GCG→GAG) |
tfaP → tfaE ← |
e14 prophage; uncharacterized protein e14 prophage; putative tail fiber assembly protein |
| RA | 1,263,932 | C→A | 9.7% | P104P (CCC→CCA) | kdsA → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
| RA | 1,269,437 | C→T | 8.3% | F66F (TTC→TTT) | ychO → | putative invasin |
| RA | 1,274,398 | C→A | 7.2% | A329E (GCG→GAG) | narK → | nitrate/nitrite transporter |
| RA | 1,282,249 | A→G | 15.0% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,421 | A→G | 5.2% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,353,970 | G→T | 7.0% | P399Q (CCG→CAG) | puuA ← | glutamate‑‑putrescine ligase |
| RA | 1,422,040 | A→G | 11.9% | pseudogene (944/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,060 | G→C | 16.5% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,627 | A→G | 6.3% | pseudogene (357/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,447,260 | T→C | 10.5% | S214G (AGT→GGT) | paaZ ← | fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,454,392 | C→A | 6.2% | P361Q (CCG→CAG) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| RA | 1,460,567 | A→G | 8.5% | pseudogene (919/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 14.8% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,602 | T→C | 18.8% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,695 | T→G | 8.1% | pseudogene (1047/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,900 | G→A | 6.5% | pseudogene (1252/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,502,548 | G→T | 9.5% | R504L (CGT→CTT) | ydcP → | putative peptidase |
| RA | 1,513,722 | C→T | 6.1% | P147S (CCT→TCT) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
| RA | 1,527,733 | C→A | 7.8% | E126* (GAG→TAG) | yddH ← | flavin reductase like‑protein |
| RA | 1,561,169 | G→T | 10.8% | L77I (CTT→ATT) | dosC ← | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator |
| RA | 1,566,159 | G→A | 8.7% | D48D (GAC→GAT) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
| RA | 1,629,649 | T→C | 6.2% | L152L (TTA→TTG) | stfQ ← | Qin prophage; putative side tail fiber assembly protein |
| RA | 1,629,727 | A→G | 5.6% | V126V (GTT→GTC) ‡ | stfQ ← | Qin prophage; putative side tail fiber assembly protein |
| RA | 1,629,728 | A→G | 5.8% | V126A (GTT→GCT) ‡ | stfQ ← | Qin prophage; putative side tail fiber assembly protein |
| RA | 1,629,745 | T→A | 6.4% | A120A (GCA→GCT) | stfQ ← | Qin prophage; putative side tail fiber assembly protein |
| RA | 1,629,762 | T→C | 8.1% | T115A (ACT→GCT) | stfQ ← | Qin prophage; putative side tail fiber assembly protein |
| RA | 1,638,422 | G→T | 5.3% | S47Y (TCC→TAC) | ydfU ← | Qin prophage; uncharacterized protein |
| RA | 1,647,592 | C→T | 7.7% | R194H (CGC→CAC) | rspB ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,671,533 | C→A | 8.9% | E210* (GAA→TAA) | pntA ← | pyridine nucleotide transhydrogenase, alpha subunit |
| RA | 1,681,696 | A→G | 6.4% | G313G (GGT→GGC) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,919,123 | G→A | 5.6% | P35L (CCT→CTT) | yobA ← | CopC family protein |
| RA | 1,984,659 | C→T | 7.8% | G148S (GGT→AGT) | yecA ← | UPF0149 family protein |
| RA | 2,003,340 | T→C | 5.4% | D13D (GAT→GAC) | yedK → | DUF159 family protein |
| RA | 2,022,694 | G→A | 5.7% | R52W (CGG→TGG) | yedI ← | DUF808 family inner membrane protein |
| RA | 2,090,755 | C→T | 6.1% | intergenic (+49/+47) | hisI → / ← wzzB | fused phosphoribosyl‑AMP cyclohydrolase/phosphoribosyl‑ATP pyrophosphatase/regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 2,109,077 | C→A | 7.1% | G101C (GGC→TGC) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,186,969:1 | +G | 6.0% | coding (679/1110 nt) | mrp ← | antiporter inner membrane protein |
| RA | 2,204,389 | G→A | 6.7% | pseudogene (1811/2001 nt) | yehQ → | pseudogene |
| RA | 2,208,347 | G→T | 7.9% | M1M (ATG→ATT) † | mlrA → | transcriptional activator of csgD and csgBA |
| RA | 2,212,588 | G→A | 6.1% | P125S (CCT→TCT) | osmF ← | putative ABC superfamily transporter periplasmic‑binding protein |
| RA | 2,222,669 | T→A | 13.5% | intergenic (+125/+248) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,282,187 | C→A | 8.9% | pseudogene (207/2525 nt) | yejO ← | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,298,128 | C→T | 9.1% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,352,939 | C→A | 5.3% | L231L (CTG→CTT) | rhmT ← | putative L‑rhamnonate transporter |
| RA | 2,442,047 | G→T | 7.3% | intergenic (‑128/‑38) | prmB ← / → smrB | N5‑glutamine methyltransferase/putative DNA endonuclease |
| RA | 2,465,390 | T→G | 17.0% | pseudogene (212/579 nt) | yfdL ← | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related |
| RA | 2,465,398 | C→A | 17.6% | pseudogene (204/579 nt) | yfdL ← | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related |
| RA | 2,465,404 | G→A | 17.4% | pseudogene (198/579 nt) | yfdL ← | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related |
| RA | 2,465,408 | A→G | 21.2% | pseudogene (194/579 nt) | yfdL ← | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related |
| RA | 2,501,962 | T→C | 6.5% | Q315R (CAG→CGG) | glk ← | glucokinase |
| RA | 2,520,778 | G→T | 6.2% | G158G (GGG→GGT) | yfeH → | putative inorganic ion transporter |
| RA | 2,537,074 | C→T | 7.7% | intergenic (‑187/+117) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,537,077 | A→C | 7.8% | intergenic (‑190/+114) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,537,086 | G→A | 6.4% | intergenic (‑199/+105) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,537,810 | G→A | 6.2% | A58V (GCG→GTG) | ucpA ← | furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,570,278 | C→A | 5.1% | G487C (GGC→TGC) | maeB ← | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
| RA | 2,631,157 | C→A | 10.9% | S285S (TCG→TCT) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,708,742 | C→T | 9.1% | intergenic (‑63/‑40) | yfiE ← / → eamB | putative DNA‑binding transcriptional regulator/cysteine and O‑acetylserine exporter |
| RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,771,760 | A→G | 7.0% | R1442R (CGT→CGC) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,823,222 | G→A | 6.8% | L17L (TTG→TTA) | srlQ → | D‑arabinose 5‑phosphate isomerase |
| RA | 2,881,921 | C→T | 6.2% | R513H (CGT→CAT) | cysI ← | sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
| RA | 2,891,408:1 | +A | 5.0% | coding (1370/1455 nt) | ygcU ← | putative FAD‑containing dehydrogenase |
| RA | 2,891,408:2 | +G | 5.0% | coding (1370/1455 nt) | ygcU ← | putative FAD‑containing dehydrogenase |
| RA | 2,891,408:3 | +A | 5.0% | coding (1370/1455 nt) | ygcU ← | putative FAD‑containing dehydrogenase |
| RA | 2,891,408:4 | +C | 5.0% | coding (1370/1455 nt) | ygcU ← | putative FAD‑containing dehydrogenase |
| RA | 2,958,491 | C→G | 13.5% | M8I (ATG→ATC) | thyA ← | thymidylate synthetase |
| RA | 2,975,338 | C→A | 6.2% | M68I (ATG→ATT) | araE ← | arabinose transporter |
| RA | 3,031,784 | G→A | 5.5% | A133V (GCG→GTG) | dsbC ← | protein disulfide isomerase II |
| RA | 3,061,173 | C→A | 5.6% | A89A (GCG→GCT) | yggE ← | oxidative stress defense protein |
| RA | 3,064,718 | T→G | 13.4% | intergenic (‑115/+100) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,129,074 | C→G | 5.6% | A219A (GCG→GCC) ‡ | pitB ← | phosphate transporter |
| RA | 3,129,075 | G→A | 5.4% | A219V (GCG→GTG) ‡ | pitB ← | phosphate transporter |
| RA | 3,129,076 | C→T | 5.4% | A219T (GCG→ACG) ‡ | pitB ← | phosphate transporter |
| RA | 3,129,085 | C→G | 5.6% | V216L (GTT→CTT) | pitB ← | phosphate transporter |
| RA | 3,129,086 | A→G | 5.2% | I215I (ATT→ATC) | pitB ← | phosphate transporter |
| RA | 3,227,874:1 | +G | 9.4% | intergenic (‑60/+224) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,311,602 | T→C | 6.5% | noncoding (47/77 nt) | metY ← | tRNA‑Met |
| RA | 3,416,890 | T→G | 6.4% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,416,899 | A→G | 11.3% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,457,757 | T→C | 5.2% | I159I (ATT→ATC) | gspL → | general secretory pathway component, cryptic |
| RA | 3,464,590 | G→A | 5.7% | T33T (ACC→ACT) | tufA ← | translation elongation factor EF‑Tu 1 |
| RA | 3,508,234 | G→A | 5.7% | T62I (ACC→ATC) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 3,518,082 | C→G | 5.0% | P618R (CCG→CGG) | mrcA → | fused penicillin‑binding protein 1a: murein transglycosylase/murein transpeptidase |
| RA | 3,617,887 | T→C | 8.1% | F50F (TTT→TTC) | yhhI → | putative transposase |
| RA | 3,643,034 | C→A | 7.2% | P247Q (CCG→CAG) | arsB → | arsenite/antimonite transporter |
| RA | 3,662,519 | G→A | 8.4% | I10I (ATC→ATT) | yhjA ← | putative cytochrome C peroxidase |
| RA | 3,666,026 | C→A | 7.5% | Q85K (CAG→AAG) | yhjC → | LysR family putative transcriptional regulator |
| RA | 3,668,978 | C→T | 6.3% | A278V (GCC→GTC) | yhjE → | MFS superfamily sugar transport 1 family protein |
| RA | 3,679,022 | C→A | 6.1% | intergenic (‑44/+38) | yhjK ← / ← bcsC | cyclic‑di‑GMP phosphodiesterase/cellulose synthase subunit |
| RA | 3,745,637 | G→A | 8.5% | G96S (GGT→AGT) | yiaU → | putative DNA‑binding transcriptional regulator |
| RA | 3,758,716 | A→G | 5.4% | R1058R (AGA→AGG) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| RA | 3,813,378 | C→A | 5.4% | A385S (GCA→TCA) | ligB ← | DNA ligase, NAD(+)‑dependent |
| RA | 3,821,284 | A→C | 5.9% | F248V (TTC→GTC) | gltS ← | glutamate transporter |
| RA | 3,887,508 | G→T | 6.5% | G90C (GGC→TGC) | yieE → | phosphopantetheinyl transferase superfamily protein |
| RA | 3,911,412 | C→A | 7.1% | D72Y (GAC→TAC) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| RA | 3,963,558 | G→T | 7.5% | A22A (GCG→GCT) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| RA | 4,097,676 | G→A | 7.4% | G66D (GGT→GAT) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,100,237 | C→T | 5.9% | A127V (GCG→GTG) | cdh → | CDP‑diacylglycerol phosphotidylhydrolase |
| RA | 4,102,717 | G→T | 9.1% | intergenic (+34/‑178) | yiiR → / → yiiS | DUF805 family putative inner membrane protein/UPF0381 family protein |
| RA | 4,143,463 | T→C | 7.3% | intergenic (‑437/+161) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
| RA | 4,173,025 | A→T | 54.0% | Q618L (CAG→CTG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,178,500 | C→T | 22.4% | R1075C (CGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,208,093 | G→T | 6.9% | A353S (GCA→TCA) | aceA → | isocitrate lyase |
| RA | 4,208,441 | T→G | 11.0% | intergenic (+100/‑83) | aceA → / → aceK | isocitrate lyase/isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,293,513 | G→T | 5.5% | R138R (CGC→CGA) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,352,388 | G→T | 7.4% | noncoding (56/76 nt) | pheU ← | tRNA‑Phe |
| RA | 4,379,302 | C→T | 6.8% | T292T (ACG→ACA) | psd ← | phosphatidylserine decarboxylase |
| RA | 4,416,123 | G→A | 5.4% | A67T (GCT→ACT) | rplI → | 50S ribosomal subunit protein L9 |
| RA | 4,525,233 | C→T | 5.8% | pseudogene (414/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
| RA | 4,540,087 | C→A | 5.2% | A343S (GCA→TCA) | gntP ← | fructuronate transporter |
| RA | 4,558,635 | G→C | 6.9% | intergenic (‑299/‑180) | mdtM ← / → yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2027277 | 2027456 | 180 | 9 [8] | [6] 9 | rseX/yedS | sRNA antisense regulator of ompA and ompC translation, Hfq‑dependent/pseudogene, outer membrane protein homology; putative outer membrane protein |
| * | * | ÷ | CP009273 | 3432085 | 3432493 | 409 | 9 [4] | [7] 10 | [zntR] | [zntR] |
| * | * | ÷ | CP009273 | 3448797 | 3448865 | 69 | 10 [8] | [2] 10 | gspA/gspC | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| * | * | ÷ | CP009273 | 3763056 | 3763264 | 209 | 9 [8] | [8] 16 | [yibV] | [yibV] |
| * | * | ÷ | CP009273 | 3797644 | 3798146 | 503 | 9 [6] | [7] 9 | waaS | lipopolysaccharide core biosynthesis protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 87 (1.070) | 100 (1.240) | 40/250 | NT | 53.5% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 372944 = | 132 (1.630) | 11 (0.160) | 3/212 | NT | 10.2% | noncoding (154/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | 4315902 = | 81 (1.180) | noncoding (284/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | 1203246 = | 39 (0.480) | 30 (0.430) | 19/218 | NT | 52.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 21 (0.300) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 37 (0.460) | 25 (0.350) | 17/218 | NT | 48.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 21 (0.300) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1972777 | 19 (0.230) | 4 (0.050) | 4/250 | NT | 17.4% | intergenic (‑323/‑457) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||
| * | ? | CP009273 | 1972854 = | 5 (0.060) | 36 (0.440) | 19/250 | NT | 87.8% | intergenic (‑400/‑380) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
| * | ? | CP009273 | = 1972861 | 9 (0.110) | 51 (0.630) | 22/250 | NT | 85.0% | intergenic (‑407/‑373) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||