SvNS: pgiBME experiment stats

Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
0	1	2
1	3	3
2	3	4
3	2	2
4	3	3
9	3	3
10	3	3
11	3	3
13	2	3
14	5	7
15	1	1
16	2	4
18	1	2
19	4	11
20	2	4
21	2	6
22	2	4
24	3	7
18	45	72

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	57	354
Multiple Base Substitutions	1	1
Deletions	14	308
Insertions	5	141
Mobile Element Insertions	0	0
Amplifications	0	0
Gene Conversions	0	0
Inversions	0	0
Total	77	804

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	6	200.2	9722189	96.7%	9401356	99.2
A0 F0 I1 R1	6	200.2	9722189	96.7%	9401356	99.2
A1 F31 I1 R1	11	90.0	3527276	93.9%	3312112	127.9
A1 F74 I1 R1	15	62.6	2301892	95.0%	2186797	133.8
A1 F113 I1 R1	14	48.8	1888792	94.5%	1784908	127.7
A2 F29 I1 R1	13	69.3	2756640	93.6%	2580215	126.3
A2 F66 I1 R1	15	85.2	3457112	93.8%	3242771	129.0
A2 F112 I1 R1	11	80.9	3115248	92.9%	2894065	138.3
A2 F112 I1 R2	12	35.0	1537662	92.8%	1426950	123.1
A3 F66 I1 R1	5	0.0	0	0.0%	0	0.0
A3 F104 I1 R1	18	60.0	1998682	96.3%	1924730	144.9
A4 F30 I1 R1	14	97.2	3717606	93.8%	3487114	131.1
A4 F69 I1 R2	0	0.0	754	3.1%	23	128.2
A4 F104 I1 R1	16	99.5	4038180	93.0%	3755507	124.7
A9 F36 I1 R1	14	153.6	5787074	94.9%	5491933	130.7
A9 F93 I1 R1	17	216.9	8475822	94.2%	7984224	127.2
A9 F145 I1 R1	15	147.1	5390490	95.0%	5120965	134.1
A10 F22 I1 R1	8	14.7	547520	94.4%	516858	130.9
A10 F35 I1 R1	12	150.5	5786992	94.2%	5451346	129.1
A10 F144 I1 R1	18	133.2	5147300	94.4%	4859051	128.2
A11 F38 I1 R1	13	205.6	8201270	93.8%	7692791	125.3
A11 F95 I1 R1	14	107.3	4270490	94.4%	4031342	124.5
A11 F145 I1 R1	14	93.1	3532004	95.3%	3365999	129.2
A13 F8 I1 R1	9	193.7	9558245	95.5%	9128123	98.8
A13 F29 I1 R1	10	193.6	9487637	95.4%	9051205	99.1
A13 F29 I1 R1	10	193.6	9487637	95.4%	9051205	99.1
A14 F11 I1 R1	8	63.5	2219170	94.7%	2101553	140.6
A14 F15 I1 R1	11	57.1	2000312	95.2%	1904297	139.9
A14 F22 I1 R1	13	46.3	1618126	93.8%	1517802	142.7
A14 F22 I1 R1	13	46.3	1618126	93.8%	1517802	142.7
A14 F35 I1 R1	8	31.8	1197174	93.9%	1124146	141.2
A14 F41 I1 R1	15	48.1	1673764	93.6%	1566643	143.0
A14 F41 I1 R1	15	48.1	1673764	93.6%	1566643	143.0
A15 F16 I1 R1	9	222.4	11067152	95.2%	10535928	98.8
A16 F7 I1 R1	8	212.5	10623658	95.0%	10092475	98.8
A16 F7 I1 R1	8	212.5	10623658	95.0%	10092475	98.8
A16 F27 I1 R1	6	243.6	12131915	95.4%	11573846	98.9
A16 F27 I1 R1	6	243.6	12131915	95.4%	11573846	98.9
A18 F20 I1 R1	9	45.0	1545608	94.3%	1457508	143.8
A18 F20 I1 R1	9	45.0	1545608	94.3%	1457508	143.8
A19 F7 I1 R1	8	41.5	1467522	91.4%	1341315	145.8
A19 F7 I2 R1	12	31.6	1093458	93.0%	1016915	144.9
A19 F20 I2 R1	11	30.6	1075110	91.5%	983725	145.1
A19 F20 I2 R1	11	30.6	1075110	91.5%	983725	145.1
A19 F45 I0 R1	24	50.5	1802666	89.0%	1604372	146.7
A19 F45 I0 R1	24	50.5	1802666	89.0%	1604372	146.7
A19 F45 I1 R1	12	36.2	1274254	93.7%	1193975	141.7
A19 F45 I1 R1	12	36.2	1274254	93.7%	1193975	141.7
A19 F45 I2 R1	10	30.1	1054246	93.1%	981503	143.6
A19 F45 I2 R1	10	30.1	1054246	93.1%	981503	143.6
A19 F94 I1 R1	13	88.8	2980372	95.0%	2831353	148.5
A20 F7 I1 R1	11	43.1	1491906	94.3%	1406867	142.9
A20 F7 I1 R1	11	43.1	1491906	94.3%	1406867	142.9
A20 F19 I2 R1	11	40.0	1381310	93.5%	1291524	144.4
A20 F19 I2 R1	11	40.0	1381310	93.5%	1291524	144.4
A21 F26 I1 R1	11	80.2	2791164	94.9%	2648814	141.1
A21 F26 I1 R1	11	80.2	2791164	94.9%	2648814	141.1
A21 F26 I2 R1	11	45.3	1568876	93.5%	1466899	143.9
A21 F26 I2 R1	11	45.3	1568876	93.5%	1466899	143.9
A21 F52 I1 R1	13	60.4	1925476	97.5%	1877339	149.8
A21 F52 I1 R1	13	60.4	1925476	97.5%	1877339	149.8
A22 F8 I1 R1	11	75.7	2655044	92.7%	2461225	143.5
A22 F8 I1 R1	11	75.7	2655044	92.7%	2461225	143.5
A22 F59 I1 R1	12	40.7	1542742	93.9%	1448634	144.3
A22 F59 I1 R1	12	40.7	1542742	93.9%	1448634	144.3
A24 F15 I1 R1	11	59.1	1889288	97.3%	1838277	149.6
A24 F15 I1 R1	11	59.1	1889288	97.3%	1838277	149.6
A24 F15 I2 R1	9	48.1	1671394	94.4%	1577795	141.9
A24 F26 I1 R1	10	55.9	2015792	89.8%	1810181	144.1
A24 F26 I1 R1	10	55.9	2015792	89.8%	1810181	144.1
A24 F41 I1 R1	10	45.6	1607158	90.6%	1456085	146.4
A24 F41 I1 R1	10	45.6	1607158	90.6%	1456085	146.4

SvNS: pgiBME - Experiment Stats

ALE, flask, and isolate counts

ALE experiment mutation counts

Sample Resequencing Stats

Mutation Needle Plot

Mutation Targets

ALE replicate	Flask count	Isolate count
0	1	2
1	3	3
2	3	4
3	2	2
4	3	3
9	3	3
10	3	3
11	3	3
13	2	3
14	5	7
15	1	1
16	2	4
18	1	2
19	4	11
20	2	4
21	2	6
22	2	4
24	3	7
18	45	72

ALE replicate	Flask count	Isolate count
0	1	2
1	3	3
2	3	4
3	2	2
4	3	3
9	3	3
10	3	3
11	3	3
13	2	3
14	5	7
15	1	1
16	2	4
18	1	2
19	4	11
20	2	4
21	2	6
22	2	4
24	3	7
18	45	72

ALE replicate	Flask count	Isolate count
0	1	2
1	3	3
2	3	4
3	2	2
4	3	3
9	3	3
10	3	3
11	3	3
13	2	3
14	5	7
15	1	1
16	2	4
18	1	2
19	4	11
20	2	4
21	2	6
22	2	4
24	3	7
18	45	72