mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 36.0% | 108.2 / 88.8 | 87 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 34.9% | 105.0 / 64.0 | 87 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 34.5% | 93.8 / 68.5 | 88 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 22.4% | 169.2 / 51.3 | 98 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 36 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4040816 | NA (NA) | 9 (0.180) | 7/262 | 6.0 | 14.3% | intergenic (+180/+90) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_pgi | = 4040840 | 58 (1.050) | intergenic (+204/+66) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_pgi | = 715221 | 48 (0.870) | 6 (0.120) | 6/260 | 6.4 | 11.6% | intergenic (+23/‑191) | pgm/ybfP | phosphoglucomutase/lipoprotein |
| ? | NC_000913_3_pae_pgi | = 715231 | 47 (0.930) | intergenic (+33/‑181) | pgm/ybfP | phosphoglucomutase/lipoprotein | |||||
| * | ? | NC_000913_3_pae_pgi | = 4541950 | 29 (0.530) | 6 (0.120) | 6/264 | 6.5 | 14.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_pgi | = 4542246 | 44 (0.850) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_pgi | 349605 = | NA (NA) | 7 (0.130) | 6/268 | 6.6 | NA | noncoding (1/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_pae_pgi | 349637 = | NA (NA) | noncoding (33/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | = 4556738 | 53 (0.960) | 5 (0.100) | 5/260 | 6.9 | 8.9% | coding (812/912 nt) | hypT | hypochlorite‑responsive transcription factor |
| ? | NC_000913_3_pae_pgi | = 4556749 | 54 (1.060) | coding (801/912 nt) | hypT | hypochlorite‑responsive transcription factor | |||||
| * | ? | NC_000913_3_pae_pgi | = 1235685 | 42 (0.760) | 5 (0.100) | 5/264 | 7.0 | 11.2% | intergenic (+28/+24) | fadR/ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| ? | NC_000913_3_pae_pgi | = 1235689 | 40 (0.780) | intergenic (+32/+20) | fadR/ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein | |||||
| * | ? | NC_000913_3_pae_pgi | 2230679 = | 57 (1.030) | 4 (0.080) | 4/266 | 7.6 | 6.9% | coding (56/399 nt) | yohJ | UPF0299 family inner membrane protein |
| ? | NC_000913_3_pae_pgi | 2230701 = | 55 (1.060) | coding (78/399 nt) | yohJ | UPF0299 family inner membrane protein | |||||
| * | ? | NC_000913_3_pae_pgi | = 4433807 | 90 (1.630) | 4 (0.080) | 4/268 | 7.7 | 4.5% | noncoding (52/111 nt) | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4433825 | NA (NA) | noncoding (70/111 nt) | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | = 4094639 | 82 (1.490) | 4 (0.080) | 4/268 | 7.7 | 4.7% | noncoding (324/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4094657 | 83 (1.580) | noncoding (342/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913_3_pae_pgi | = 4094632 | 79 (1.510) | 4 (0.080) | 4/268 | 7.7 | 4.8% | noncoding (317/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913_3_pae_pgi | = 4284634 | NA (NA) | noncoding (73/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||