New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4094632	79 (1.510)	4 (0.080)	4/268	7.7	4.8%	noncoding (317/402 nt)	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
	?	NC_000913_3_pae_pgi	= 4284634	NA (NA)					noncoding (73/77 nt)	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCG  >  NC_000913_3_pae_pgi/4094486‑4094780                                                                                                                                                    |                                                                                                                                                     aCTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCTGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGc                                                                                                                                                    <  1:24170/149‑1 (MQ=37)   tGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCt                                                                                                                                                  >  1:747092/1‑149 (MQ=38)     ttGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTTTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGa                                                                                                                                                <  2:744796/149‑1 (MQ=17)         cGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCg                                                                                                                                            >  1:486916/1‑149 (MQ=35)         cGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATCCCCGCTGCg                                                                                                                                            >  2:705770/1‑149 (MQ=255)          gACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGa                                                                                                                                           >  2:670029/1‑149 (MQ=35)                 aGGCCAGATAAGGCTCCTGGGCCGCAACCGGCCATACCTGACAGGTGGGACGCTGTAGCGTCTTATCAGGCCTACAACGATTGCCGACCTGTAGGCCGGATAATGCACGTGGGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTc                                                                                                                                    <  2:230229/149‑1 (MQ=11)                  ggCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGAGCC‑GCATACGGCAATCAATGCCTGATGCGACGCTGTcg                                                                                                                                   >  1:904872/1‑149 (MQ=25)                    ccGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTcgcg                                                                                                                                 <  1:670029/149‑1 (MQ=35)                      ggATAAGGCACTTGTGCAGCATCCAGCAATCAATGCCTGATACGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCAACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGCCAATCAATGCCTGATGCGACACTGTcacgcc                                                                                                                               >  2:343851/1‑147 (MQ=11)                             gCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCCATCAATGCCGAATGCGAGACTGACGCGTCTTATCat                                                                                                                        >  1:178500/1‑148 (MQ=11)                               aCTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                                                                                                      <  1:948273/149‑1 (MQ=32)                                 ttGTGCCGCATCCGGCAATAAATCACTTTTGCAACGCTATCGCGTCTTATCAGGCCTACAACTATTGCCAACCCGTAGGCCGGATAAGGCACGTGTGCC‑GCATCCGGCAATAAATGCCTAGTGCGCCGCCGTCTCGTCTTATCatcctc                                                                                                                    >  2:412069/1‑144 (MQ=11)                                     gCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACaa                                                                                                                >  2:651591/1‑149 (MQ=32)                                       cGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCa                                                                                                                         <  2:488067/138‑1 (MQ=32)                                       cGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACt                                                                                                              >  1:961599/1‑149 (MQ=32)                                         cATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTCTCAGGCCTACAACTGt                                                                                                            >  1:358037/1‑149 (MQ=17)                                          aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGtt                                                                                                           <  2:597553/149‑1 (MQ=32)                                           tCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGttt                                                                                                          <  2:737445/149‑2 (MQ=17)                                            ccGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc                                                                                                         <  1:267896/149‑1 (MQ=32)                                            ccGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc                                                                                                         <  1:604239/149‑1 (MQ=32)                                              ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCg                                                                                                       >  1:484994/1‑149 (MQ=32)                                                 aatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGAcc                                                                                                    >  1:609689/1‑149 (MQ=32)                                                    caatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGt                                                                                                 >  1:647695/1‑149 (MQ=35)                                                      atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGCTGCGACGCTGTCGCGTCTTATCAGACCTCCAGCAGTTGCCGACCCGTac                                                                                               >  2:152454/1‑148 (MQ=11)                                                      atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc                                                                                                         <  1:146517/139‑1 (MQ=33)                                                      atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc                                                                                                         >  2:146517/1‑139 (MQ=33)                                                         ccTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCGACAACTGTTGCCGACCCGTAGGcc                                                                                            >  1:379385/1‑149 (MQ=25)                                                            gATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGa                                                                                         <  1:651591/149‑1 (MQ=35)                                                                 gACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTCTCAGGCCTACAACTGTTGCGGACCCGAACGCCCGAtgcgg                                                                                    >  1:279525/1‑145 (MQ=11)                                                                 gACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACGGTTCCCCACCGCTAGGCCGGATAAgg                                                                                    >  1:580737/1‑149 (MQ=11)                                                                  aCGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGgc                                                                                   <  1:323369/149‑1 (MQ=35)                                                                    gCTGTCGCTTCTTATCAGGCCTACAACTATCGCCGCCCTGTAGGCCGGATAAGGCACGTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGgcgc                                                                                 <  1:734188/149‑1 (MQ=255)                                                                    gCTGTCGCGTCTTATCAGGCCTACAACTTTTGCCGGCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGgcgc                                                                                 <  1:734125/149‑1 (MQ=25)                                                                       gTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTcg                                                                              >  2:861209/1‑149 (MQ=39)                                                                        tCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCAcgc                                                                             >  1:99350/1‑149 (MQ=38)                                                                          gcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATACGGCAGTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCgcgc                                                                           >  1:677216/1‑149 (MQ=255)                                                                          gcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc                                                                                                         >  1:969130/1‑119 (MQ=33)                                                                          gcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGc                                                                                                         <  2:969130/119‑1 (MQ=32)                                                                            gTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑TGATCCGGCAGTCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGcgccg                                                                         >  1:278321/1‑149 (MQ=255)                                                                                  tCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                                                                                                      <  2:614480/98‑1 (MQ=33)                                                                                     ggCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCa                                                                <  2:747092/149‑1 (MQ=255)                                                                                      gCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATg                                                                                                                                                     <  1:285258/63‑1 (MQ=37)                                                                                      gCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATACGGCGCTCGAGCCGCATCCGGCAg                                                               >  1:883678/1‑149 (MQ=255)                                                                                      gCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATACGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGACGGGATAAGGCGATAGCGCCGCATCCGGCAg                                                               >  1:797586/1‑149 (MQ=14)                                                                                       ccTACACTTATTGCCGACCTGTAGGATGGATAGGGCAC‑TGTGCCTGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt                                                              <  1:179421/149‑1 (MQ=14)                                                                                       ccTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt                                                              <  2:486916/149‑1 (MQ=255)                                                                                       ccTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt                                                              >  1:567443/1‑149 (MQ=255)                                                                                         tACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTc                                                                               <  1:647005/130‑1 (MQ=40)                                                                                         tACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTc                                                                               >  2:647005/1‑130 (MQ=40)                                                                                         tACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCCTCCGGCCgtgt                                                            >  2:48307/1‑149 (MQ=255)                                                                                            aaCTATTGCCGACCTGTAGGCCGGATAAGGAACTAGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTa                                                         >  2:209976/1‑149 (MQ=255)                                                                                               tATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTAccc                                                      <  2:765454/149‑1 (MQ=255)                                                                                                       aCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTg                                                                                                          <  1:19663/89‑1 (MQ=33)                                                                                                       aCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTg                                                                                                          >  2:19663/1‑89 (MQ=35)                                                                                                       aCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCa                                                                <  1:364639/131‑1 (MQ=255)                                                                                                       aCCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCa                                                                >  2:364639/1‑131 (MQ=255)                                                                                                        ccTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCTTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACt                                             <  1:902536/149‑1 (MQ=255)                                                                                                             aGGCCGGATAAGGCACTGGGGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCaaaa                                        <  2:47737/149‑1 (MQ=255)                                                                                                               gCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAgg                                                                                    <  1:151258/103‑1 (MQ=38)                                                                                                               gCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtt                                      >  1:929573/1‑149 (MQ=255)                                                                                                                ccGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAttt                                     <  1:842234/149‑1 (MQ=255)                                                                                                                         gCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTGCCCGCGGCGACTCAAAATTTCTTTCTCAt                            >  2:514337/1‑149 (MQ=255)                                                                                                                           aCTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATaa                          <  2:609689/149‑1 (MQ=255)                                                                                                                           aCTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATaa                          <  1:701833/149‑1 (MQ=255)                                                                                                                           aCTTGGGCC‑GCAGCCGCCAATCAATGCCTGGTGCGACGCTGTCGCGTCGTATCAGTCCTACAACTGTTGCCGACCCGTAGGCCGGATAATGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATaa                          <  1:199596/149‑1 (MQ=37)                                                                                                                             ttGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttct                                   >  1:512466/1‑138 (MQ=255)                                                                                                                             ttGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttct                                   <  2:512466/138‑1 (MQ=255)                                                                                                                             ttGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGATCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGc                        >  1:918961/1‑149 (MQ=255)                                                                                                                                 gCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGc                    <  1:702674/149‑1 (MQ=255)                                                                                                                                  cc‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCa                   <  1:669580/149‑1 (MQ=255)                                                                                                                                   c‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCAc                  >  2:633301/1‑149 (MQ=255)                                                                                                                                       aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGct               <  2:647695/149‑1 (MQ=255)                                                                                                                                          cGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCtctc            >  2:559834/1‑149 (MQ=255)                                                                                                                                           ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGc                                                                                             <  1:218001/67‑1 (MQ=37)                                                                                                                                           ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTcc           >  1:904562/1‑149 (MQ=255)                                                                                                                                           ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCCCACGCTCTcc           >  2:746282/1‑149 (MQ=255)                                                                                                                                            gCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCa          <  1:650862/149‑1 (MQ=255)                                                                                                                                            ccaagcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCa          <  1:705770/144‑1 (MQ=255)                                                                                                                                               atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGcc       <  2:567443/149‑1 (MQ=255)                                                                                                                                               atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGcc       <  1:962915/149‑1 (MQ=255)                                                                                                                                                   atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGAccc                                                                                                   <  1:811911/53‑1 (MQ=31)                                                                                                                                                    tGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGACCGTGTAAGACGCTCGCTCCGCATCCGGCAGTGTTTAACCGCGGCGACTCAAAATTTGTTTCTCATAAGCCCGCACGCTCTCCAGCCATGCg  >  1:277085/1‑149 (MQ=25)                                                                                                                                                    |                                                                                                                                                     ACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCC‑GCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCG  >  NC_000913_3_pae_pgi/4094486‑4094780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.