New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 715221	48 (0.870)	6 (0.120)	6/260	6.4	11.6%	intergenic (+23/‑191)	pgm/ybfP	phosphoglucomutase/lipoprotein
	?	NC_000913_3_pae_pgi	= 715231	47 (0.930)					intergenic (+33/‑181)	pgm/ybfP	phosphoglucomutase/lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAACAC  >  NC_000913_3_pae_pgi/715088‑715376                                                                                                                                                |                                                                                                                                                  atggAAGACGCATAGTAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGccc                                                                                                                                              <  2:728974/147‑1 (MQ=255) aCGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGACAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAGAAAAAGGGCGGTCGCAAGATCGccc                                                                                                                                              >  1:876019/1‑149 (MQ=255)    gAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCttt                                                                                                                                           <  1:793916/149‑1 (MQ=255)        aCGCATACAAGATCTGCTGAGAAAGCTTCCTCGATGAAGAACATCGCAAGCAGATTGAGACAGAAGCGGTTGAGATTGTTAGCGAAGTTGTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTa                                                                                                                                       <  2:367412/149‑1 (MQ=255)         cGCATATAAGATCTACTGCGAAAGCCTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTACTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTAc                                                                                                                                      <  1:955870/149‑1 (MQ=255)           cATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGATCTTGCGACCGCCCtttt                                                                                                                                          >  1:125116/1‑143 (MQ=255)              ataAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTCCGTATg                                                                                                                                 >  1:464708/1‑149 (MQ=255)                aaGATCTAGTGCGAAAGCTTCCTCGGTGAAGAAGATCGCAAGCAGAGTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTTAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGAc                                                                                                                               <  2:464896/149‑1 (MQ=255)                aaGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGAAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAACAAGGGCGGTCGCAAGATGGCCCTTTTTTACGTATGAc                                                                                                                               >  1:486836/1‑149 (MQ=255)                   aacTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACaaa                                                                                                                            <  1:377248/147‑1 (MQ=255)                   aTCTACTGCGAAAGCTTCCTCGGTGACGCACATCGCAAGCAGCTTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACaaa                                                                                                                            >  1:385127/1‑149 (MQ=255)                   aTCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACaaa                                                                                                                            <  1:847017/149‑1 (MQ=255)                      tACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAATAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAacac                                                                                                                         >  1:269772/1‑149 (MQ=255)                      tACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAacac                                                                                                                         >  1:98662/1‑149 (MQ=255)                      tACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAacac                                                                                                                         >  1:416525/1‑149 (MQ=255)                              aaGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGAGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGc                                                                                                                 <  2:385127/149‑1 (MQ=255)                                  ttCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGa                                                                                                             >  2:799146/1‑149 (MQ=255)                                  ttCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGa                                                                                                             >  1:496025/1‑149 (MQ=255)                                  ttCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTCTTACGTAGTACAACCACCGAATTGCCTGa                                                                                                             >  1:257796/1‑149 (MQ=255)                                                   tCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTAt                                                                                               <  2:548258/146‑1 (MQ=255)                                                   tCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTAt                                                                                               >  1:548258/1‑146 (MQ=255)                                                     gaaaGCATAGTGAGAAAGAAGCGGTTGAGATGGTGAGAGAAGTTCTGAAAACCGCGTAAACACATTTAATAAAAAAAAGGCGGTCGCAAGATCGCCCTTTTTTACGTATCACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGc                                                                                          <  1:154963/147‑1 (MQ=255)                                                      cAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAAAATTGACTGATGCGCTACGCTTATCAGGcc                                                                                         >  2:15067/1‑149 (MQ=255)                                                       aaGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAac                                                                                                                           >  1:642665/1‑114 (MQ=255)                                                       aaGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAac                                                                                                                           <  2:642665/114‑1 (MQ=255)                                                         gCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAAtt                                                                                                                   <  1:331750/120‑1 (MQ=255)                                                         gCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAAtt                                                                                                                   >  2:331750/1‑120 (MQ=255)                                                          cAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAACAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACATAATTGCCTGATGCGCTACGCTTATCAGGCCTACg                                                                                     <  2:769724/149‑1 (MQ=255)                                                             aTTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAgg                                                                                  >  1:371226/1‑149 (MQ=255)                                                               tGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGAt                                                                                <  1:699614/149‑1 (MQ=255)                                                                         gCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATCTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAatat                                                                      >  2:783484/1‑149 (MQ=255)                                                                            gTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTTCAATATAtt                                                                   >  2:43745/1‑149 (MQ=255)                                                                               gagaTTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTACCAGGCCTACGAGGATGGTGCAATATATTGaa                                                                <  2:350518/149‑1 (MQ=255)                                                                                agaATGTCAGCGAAGTGCTGAAAAACGCGCAAACACATTTAATAAAAAAAGGGCGATCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCTCTACGTTTATCAGGCCTACGAGGGTGGTGCAATATATTGAAt                                                               <  1:245334/149‑1 (MQ=255)                                                                                   ttGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTa                                                            >  1:146467/1‑149 (MQ=255)                                                                                    tGTTAGCGAAGTTCAGAAAAACGCGTAAACACATTTAATAAGAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTaa                                                           <  2:954230/149‑1 (MQ=255)                                                                                          cGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGAtt                                                     <  1:538027/149‑1 (MQ=255)                                                                                               ttCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAAttt                                                             >  2:121163/1‑136 (MQ=255)                                                                                               ttCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAAttt                                                             <  1:121163/136‑1 (MQ=255)                                                                                                    aaaaaCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCACTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAGGCGATTTTGTAGGCCg                                           >  1:168037/1‑149 (MQ=255)                                                                                                         cgcgTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAacac                                                                                                                         >  1:935756/1‑66 (MQ=255)                                                                                                         cgcgTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAacac                                                                                                                         <  2:935756/66‑1 (MQ=255)                                                                                                          gcgTAAACATATTTAATAAAAAAATGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAg                                     <  2:475687/149‑1 (MQ=255)                                                                                                          gcgTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAg                                     >  1:873613/1‑149 (MQ=255)                                                                                                            gTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAatatat                                                                    >  2:328006/1‑116 (MQ=255)                                                                                                            gTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAatatat                                                                    <  1:328006/116‑1 (MQ=255)                                                                                                                  acaTTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCAc                             >  1:805927/1‑149 (MQ=255)                                                                                                                              aaaaGGGGGGTCGCAAGATCGCCCTTTTTTACGTAGGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                 <  2:257796/149‑1 (MQ=25)                                                                                                                              aaaaGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                 >  1:844344/1‑149 (MQ=255)                                                                                                                                         ggCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGa      <  2:908914/148‑1 (MQ=255)                                                                                                                                             aGATCGCCCTGTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATTCGGCAAAAACAACGAacac  <  2:105601/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                  ACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAACAC  >  NC_000913_3_pae_pgi/715088‑715376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.