mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 34.0% | 108.6 / 87.8 | 97 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,094,069 | 0 | A | G | 25.4% | 297.4 / 111.5 | 174 | I398M (ATA→ATG) | ycdT | diguanylate cyclase, membrane‑anchored |
| * | NC_000913 | 4,296,191 | 0 | A | C | 21.9% | 111.3 / 30.1 | 84 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,311,197 | 0 | G | T | 21.1% | 269.2 / 14.0 | 129 | E37* (GAA→TAA) | tonB | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| * | NC_000913 | 4,472,295 | 0 | T | G | 20.0% | 372.0 / 19.0 | 155 | N34T (AAC→ACC) | pyrB | aspartate carbamoyltransferase, catalytic subunit |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 156 (0.940) | 40 (0.330) | 10/438 | 14.8 | 27.2% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 100 (0.820) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542682 = | 222 (1.330) | 16 (0.100) | 16/580 | 15.4 | 7.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 186 (1.150) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2819836 = | 141 (0.850) | 5 (0.030) | 5/578 | 22.2 | 3.5% | coding (2176/2631 nt) | alaS | alanyl‑tRNA synthetase |
| ? | NC_000913 | 2819907 = | 137 (0.850) | coding (2105/2631 nt) | alaS | alanyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 2737771 | 169 (1.010) | 5 (0.030) | 5/590 | 22.5 | 2.8% | coding (27/1161 nt) | pheA | chorismate mutase and prephenate dehydratase, P‑protein |
| ? | NC_000913 | = 2737873 | 175 (1.060) | coding (129/1161 nt) | pheA | chorismate mutase and prephenate dehydratase, P‑protein | |||||
| * | ? | NC_000913 | 1279366 = | 158 (0.950) | 5 (0.030) | 5/588 | 22.5 | 3.1% | intergenic (+18/‑498) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| ? | NC_000913 | 1279464 = | 154 (0.940) | intergenic (+116/‑400) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit | |||||
| * | ? | NC_000913 | 1964368 = | 136 (0.820) | 4 (0.020) | 4/580 | 23.2 | 3.3% | coding (683/2079 nt) | flhA | putative flagellar export pore protein |
| ? | NC_000913 | 1964549 = | 102 (0.630) | coding (502/2079 nt) | flhA | putative flagellar export pore protein | |||||
| * | ? | NC_000913 | 4325849 = | NA (NA) | 3 (0.020) +TGGTGCCGAC |
3/578 | 24.1 | NA | noncoding (48/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4326338 | NA (NA) | noncoding (537/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | = 3600537 | 169 (1.010) | 3 (0.020) | 3/578 | 24.1 | 1.7% | coding (247/855 nt) | rpoH | RNA polymerase, sigma 32 (sigma H) factor |
| ? | NC_000913 | = 3600697 | 175 (1.090) | coding (87/855 nt) | rpoH | RNA polymerase, sigma 32 (sigma H) factor | |||||
| * | ? | NC_000913 | = 1037292 | 152 (0.910) | 3 (0.020) | 3/578 | 24.1 | 1.9% | coding (544/858 nt) | hyaF | hydrogenase‑1 protein nickel incorporation factor |
| ? | NC_000913 | = 1037427 | 157 (0.970) | coding (679/858 nt) | hyaF | hydrogenase‑1 protein nickel incorporation factor | |||||
| * | ? | NC_000913 | 4359413 = | 164 (0.980) | 4 (0.020) | 3/582 | 24.2 | 2.4% | coding (619/1335 nt) | cadB | putative lysine/cadaverine transporter |
| ? | NC_000913 | 4359494 = | 166 (1.020) | coding (538/1335 nt) | cadB | putative lysine/cadaverine transporter | |||||