New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 855791	82 (1.030)	3 (0.040)	3/250	12.6	4.1%	coding (14/147 nt)	USA300HOU_0800	hypothetical protein
	?	CP000730	= 1695118	66 (0.900)					coding (24/129 nt)	USA300HOU_1585	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGATTCTAGAGCAT  >  CP000730/855652‑855931                                                                                                                                            |                                                                                                                                             cAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGccccac                                                                                                                                             >  1:609105/1‑141 (MQ=255)    aaTTTATTTCGTCGTCCCACCCCAACTTCCATTGTCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCACCTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGccccacccc                                                                                                                                          >  1:92595/1‑141 (MQ=255)          tttCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCg                                                                                                                                    <  1:631484/141‑1 (MQ=255)                 gtcCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGcc                                                                                                                             <  2:786657/141‑1 (MQ=255)                    ccACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGt                                                                                                                          >  1:527355/1‑141 (MQ=255)                    ccACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGt                                                                                                                          >  1:217969/1‑141 (MQ=255)                             cTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAatttca                                                                                                                 >  2:818947/1‑141 (MQ=255)                                ccATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAatttcattt                                                                                                              >  1:868581/1‑141 (MQ=255)                                 cATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCCTTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAatttcatttc                                                                                                             <  1:120022/141‑1 (MQ=255)                                 cATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTATAatttcatttc                                                                                                             >  2:775687/1‑141 (MQ=255)                                 cATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAatttcatttc                                                                                                             >  1:420498/1‑141 (MQ=255)                                 cATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAatttcatttc                                                                                                             <  1:120064/141‑1 (MQ=255)                                 cATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAatttcatttc                                                                                                             >  1:297137/1‑141 (MQ=255)                                 cATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAatttcatttc                                                                                                             >  2:4984/1‑141 (MQ=255)                                  gttGCCCGTAGCAATTGGAAACCCAATTTCTTTATGTTGGGGCCCCACCCCAACTTGCTTTGCCTGTAGAAATTGGGAGGAGCCCATTTCACTATGTTGGGGCCCCCCCCCAACTCCCATTGCCTGTAGAATTTCATTTCg                                                                                                            <  2:320778/140‑1 (MQ=25)                                   ttGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGa                                                                                                           >  1:684588/1‑141 (MQ=255)                                        tGTAGAAATGGGAAATCCGATTTCTCTATTTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATtc                                                                                                      <  1:268088/141‑1 (MQ=255)                                          tAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATtctc                                                                                                    <  1:720240/141‑1 (MQ=255)                                            gAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTa                                                                                                  <  1:368408/141‑1 (MQ=255)                                            gAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTa                                                                                                  >  2:871881/1‑141 (MQ=255)                                             aaaTTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTAt                                                                                                 <  1:540856/141‑1 (MQ=255)                                                ttGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGtt                                                                                              <  1:188943/141‑1 (MQ=255)                                                ttGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGtt                                                                                              >  2:393867/1‑141 (MQ=255)                                                   gAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTggg                                                                                           <  2:351523/141‑1 (MQ=255)                                                    aaaTCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGc                                                                                                                                   >  1:432651/1‑100 (MQ=255)                                                    aaaTCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGc                                                                                                                                   <  2:432651/100‑1 (MQ=255)                                                     aaTCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGc                                                                                         >  1:311556/1‑141 (MQ=255)                                                      aTCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGcc                                                                                        >  2:334597/1‑141 (MQ=255)                                                       tCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGccc                                                                                       >  1:464297/1‑141 (MQ=255)                                                        ccAATTTCTCTATGTTGGCGCCCCACCCCAACTTGAATTGCCTGTAGAAATTGGGATGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGcccc                                                                                      <  1:359860/141‑1 (MQ=255)                                                         cAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCt                                                                                     <  1:854607/141‑1 (MQ=255)                                                          aaTTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCGCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTg                                                                                    >  2:908878/1‑141 (MQ=255)                                                          aaTTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTg                                                                                    <  1:125540/141‑1 (MQ=255)                                                            tttCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGCAATCCTCTATGTTGGGGCCCCTGAc                                                                                  >  2:732666/1‑141 (MQ=255)                                                                 ctATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTaa                                                                             >  1:667101/1‑141 (MQ=255)                                                                   aTGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAAtt                                                                           >  2:379983/1‑141 (MQ=255)                                                                     gTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTaaaaaa                                                                         <  2:667101/141‑5 (MQ=255)                                                                       tGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGAGCCCCCCCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTGTCTATGTTGGAGCCCCTAACTTTAATTGaaa                                                                       >  2:440961/1‑141 (MQ=18)                                                                        ggggCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGaaaa                                                                      <  1:389142/141‑1 (MQ=255)                                                                         gggCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGCAATTCTCTATGTTGGGGCCCCTGACTTTAATTGaaaaa                                                                     >  2:111209/1‑141 (MQ=255)                                                                          ggCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGaaaaaa                                                                    >  1:908701/1‑141 (MQ=255)                                                                           gCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTg                                                                                    <  2:739434/124‑1 (MQ=255)                                                                           gCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTg                                                                                    >  1:739434/1‑124 (MQ=255)                                                                           gCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAg                                                                   >  2:282828/1‑141 (MQ=255)                                                                             cccaccccaACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTAAAAAAAAAAAAAGCt                                                                 <  2:868581/141‑1 (MQ=18)                                                                              ccaccccaACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCtt                                                                <  2:251975/141‑1 (MQ=255)                                                                                  cccaACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTa                                                            <  1:279336/141‑1 (MQ=255)                                                                                     aaCTTGCATTGCGTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAGATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACaa                                                         <  2:708707/141‑1 (MQ=255)                                                                                     aaCTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACaa                                                         <  2:825827/141‑1 (MQ=255)                                                                                      aCTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCACCTCGCATTGCCTGTAGAATTTCATTTCGACATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAg                                                        >  2:678654/1‑141 (MQ=255)                                                                                       cTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTTCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGt                                                       >  1:52624/1‑141 (MQ=255)                                                                                       cTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGt                                                       >  1:723759/1‑141 (MQ=255)                                                                                          gCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCa                                                    <  1:871881/141‑1 (MQ=255)                                                                                           cATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCAt                                                   <  1:360542/141‑1 (MQ=255)                                                                                               gCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCAATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTttc                                               >  2:410247/1‑141 (MQ=255)                                                                                                ccTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTttcg                                              <  1:4984/141‑1 (MQ=255)                                                                                                ccTGTAGAAATTGGCAGGACCCAACTTCACTATGTTGAGCCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGTGGCCTCTGACTTTAATTTAAAAAAGCTTGTCACAAGTGCATTctcg                                              <  2:244049/141‑1 (MQ=18)                                                                                                ccTGTAGAAAGTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTttcg                                              <  2:411092/141‑1 (MQ=255)                                                                                                   gTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTttcgttc                                           >  1:322953/1‑141 (MQ=255)                                                                                                         aTTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTaa                                     <  2:322953/141‑1 (MQ=255)                                                                                                             ggaggaGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAacta                                  <  1:504074/140‑1 (MQ=255)                                                                                                             ggaggaGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAacta                                  >  2:504074/1‑140 (MQ=255)                                                                                                               aggagCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAactacta                               >  2:566023/1‑141 (MQ=255)                                                                                                                ggagCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTCAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAactactac                              >  1:473888/1‑141 (MQ=255)                                                                                                                   gCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTaa                           >  1:52564/1‑141 (MQ=255)                                                                                                                    ccAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAAt                          <  1:818947/141‑1 (MQ=255)                                                                                                                          tCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTGCAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACt                    >  1:903433/1‑141 (MQ=255)                                                                                                                          tCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACt                    >  2:74156/1‑141 (MQ=255)                                                                                                                          tCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACt                    <  1:282828/141‑1 (MQ=255)                                                                                                                             cTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACtttt                 <  2:415154/141‑1 (MQ=255)                                                                                                                                tGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGACCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTgg              >  1:236657/1‑141 (MQ=255)                                                                                                                                  ttGGCGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGAt            <  1:674865/141‑1 (MQ=255)                                                                                                                                   tGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGAtt           >  2:218593/1‑141 (MQ=255)                                                                                                                                    ggggCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAAATGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGATTc          <  2:374702/141‑1 (MQ=255)                                                                                                                                       gCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAg                                                        >  2:216366/1‑92 (MQ=255)                                                                                                                                       gCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAg                                                        <  1:216366/92‑1 (MQ=255)                                                                                                                                       gCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGATTCTag       >  1:779376/1‑141 (MQ=255)                                                                                                                                          ccaccccaACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATg                                                                                                >  2:777410/1‑49 (MQ=255)                                                                                                                                          ccaccccaACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATg                                                                                                <  1:777410/49‑1 (MQ=255)                                                                                                                                          ccaccccaACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGATTCTAGAGc    >  1:29591/1‑141 (MQ=255)                                                                                                                                           caccccaACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGATTCTAGAGCa   <  1:282111/141‑1 (MQ=255)                                                                                                                                            accccaACTCGCATTGCCTCCAGTATTGCATTTCGAAATGCTCTATGGTGGGGCCCCTGAATGTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGATTCTAGAGCAt  <  2:373364/141‑1 (MQ=21)                                                                                                                                            |                                                                                                                                             CAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTATGTTGGGGCCCCTGACTTTAATTGAAAAAAGCTTGTTACAAGTGCATTTTCGTTCGGTTAACTACTACTAATGTGACTTTTTGGATTCTAGAGCAT  >  CP000730/855652‑855931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.