| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 855791 | 82 (1.030) | 3 (0.040) | 3/250 | 12.6 | 4.1% | coding (14/147 nt) | USA300HOU_0800 | hypothetical protein |
| ? | CP000730 | = 1695118 | 66 (0.900) | coding (24/129 nt) | USA300HOU_1585 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/855646‑855791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggccccaACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTATTTTTAAGGAC < CP000730/1695118‑1694982 TTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGG < 2:507904/141‑1 TTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGC > 1:255104/1‑141 TTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGC > 1:224902/1‑141 AAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGtggggccc < 2:383953/141‑9 GAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCAACATAGAGAATTTCGA‑AATGAAATTCTACAGGCAATGCGAGTTGGG > 2:762204/1‑136 GAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCAACATAGAGAATTTCGA‑AATGAAATTCTACAGGCAATGCGAGTTGGG < 1:762204/136‑1 CAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCAACATAGAGAAATTGGATTTCCAATTTCTACAGGCAATGGAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTT > 1:175039/1‑141 ggggccccaCCCCAACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTAT > 1:452351/10‑141 TGGGGCCCCAACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTATTTTT > 2:507391/1‑141 GGGGCCCCAACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTATTTTTA > 1:78918/1‑141 GGGCCCCAACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTATTTTTAA < 2:79767/141‑1 GGCCCCAACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTATTTTTAAG < 2:112218/141‑1 GCCCCAACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTATTTTTAAGG < 1:137789/141‑1 CCCAACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTATTTTTAAGGAC > 1:37663/1‑141 TTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTGGGAGGAGCCAATTTCACTATGTTGGGGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/855646‑855791‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggccccaACATAGAGAATTTCGA‑AAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCATGTAATTTTATTTTTAAGGAC < CP000730/1695118‑1694982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |