breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913_3_bme_pgi	2,286,315	0	C	G	31.9%	100.9 / 73.4	73	intergenic (+28/+75)	proL/yejO	tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
*	NC_000913_3_bme_pgi	2,286,311	0	C	G	31.5%	101.2 / 73.9	74	intergenic (+24/+79)	proL/yejO	tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
*	NC_000913_3_bme_pgi	1,864,763	0	A	T	31.3%	107.9 / 66.2	67	intergenic (+29/+19)	yeaD/yeaE	D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
*	NC_000913_3_bme_pgi	4,296,061	0	C	T	31.2%	107.2 / 65.9	80	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913_3_bme_pgi	2,286,313	0	T	A	31.1%	92.3 / 70.4	74	intergenic (+26/+77)	proL/yejO	tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
*	NC_000913_3_bme_pgi	1,864,758	0	G	A	30.4%	94.0 / 54.9	69	intergenic (+24/+24)	yeaD/yeaE	D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
*	NC_000913_3_bme_pgi	1,864,768	0	T	C	29.2%	103.7 / 54.7	72	intergenic (+34/+14)	yeaD/yeaE	D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
*	NC_000913_3_bme_pgi	604,752	0	G	T	23.5%	157.0 / 44.2	68	intergenic (‑89/+19)	ybdG/nfsB	mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
*	NC_000913_3_bme_pgi	604,753	0	A	C	23.5%	128.8 / 48.5	68	intergenic (‑90/+18)	ybdG/nfsB	mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
*	NC_000913_3_bme_pgi	892,457	0	T	A	22.8%	171.9 / 47.5	79	I164N (ATT→AAT)	rimK	ribosomal protein S6 modification protein
*	NC_000913_3_bme_pgi	526,796	0	C	G	20.9%	260.1 / 65.8	105	A1179G (GCG→GGG)	rhsD	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*	NC_000913_3_bme_pgi	526,792	0	A	C	20.6%	228.3 / 55.4	108	S1178R (AGC→CGC)	rhsD	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*	NC_000913_3_bme_pgi	892,455	0	G	C	20.0%	199.3 / 47.4	81	V163V (GTG→GTC)	rimK	ribosomal protein S6 modification protein

Marginal new junction evidence (lowest skew 10 of 942 shown)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	4366840 =	59 (0.850)	20 (0.330)	18/220	3.7	28.2%	intergenic (‑66/+52)	dcuA/aspA	C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
	?	NC_000913_3_bme_pgi	4366872 =	50 (0.820)					intergenic (‑98/+20)	dcuA/aspA	C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
*	?	NC_000913_3_bme_pgi	= 59296	67 (0.970)	19 (0.320)	17/216	3.9	25.5%	intergenic (+17/+391)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
	?	NC_000913_3_bme_pgi	= 59302	53 (0.890)					intergenic (+23/+385)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
*	?	NC_000913_3_bme_pgi	= 1097463	21 (0.300)	20 (0.310)	18/234	4.1	52.2%	intergenic (+634/+102)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_bme_pgi	= 1097467	17 (0.260)					intergenic (+638/+98)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913_3_bme_pgi	= 1097294	13 (0.190)	20 (0.310)	18/234	4.1	57.8%	intergenic (+465/+271)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_bme_pgi	= 1097455	17 (0.260)					intergenic (+626/+110)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913_3_bme_pgi	= 1097113	59 (0.850)	20 (0.310)	18/234	4.1	35.6%	intergenic (+284/+452)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_bme_pgi	= 1097455	17 (0.260)					intergenic (+626/+110)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913_3_bme_pgi	= 1097101	57 (0.830)	20 (0.310)	18/234	4.1	36.2%	intergenic (+272/+464)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_bme_pgi	= 1097467	17 (0.260)					intergenic (+638/+98)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913_3_bme_pgi	= 1097101	57 (0.830)	20 (0.310)	18/234	4.1	38.0%	intergenic (+272/+464)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_bme_pgi	= 1097286	12 (0.190)					intergenic (+457/+279)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913_3_bme_pgi	= 1097101	57 (0.830)	20 (0.310)	18/234	4.1	27.5%	intergenic (+272/+464)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_bme_pgi	= 1097105	52 (0.800)					intergenic (+276/+460)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913_3_bme_pgi	= 3270079	57 (0.830)	18 (0.280)	17/230	4.2	25.1%	intergenic (+477/+137)	yhaC/rnpB	pentapetide repeats‑related protein/RNase P, M1 RNA component
	?	NC_000913_3_bme_pgi	= 3270083	55 (0.870)					intergenic (+481/+133)	yhaC/rnpB	pentapetide repeats‑related protein/RNase P, M1 RNA component
*	?	NC_000913_3_bme_pgi	= 225281	NA (NA)	21 (0.320)	18/240	4.2	NA	noncoding (1511/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913_3_bme_pgi	= 225293	NA (NA)					noncoding (1523/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon