| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 59296 | 67 (0.970) | 19 (0.320) | 17/216 | 3.9 | 25.5% | intergenic (+17/+391) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_bme_pgi | = 59302 | 53 (0.890) | intergenic (+23/+385) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TACCTCCTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/59132‑59296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctaaggttgaaggggcGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTATCAATTTTTTTGGGGGGGATTTTATTAATAAT < NC_000913_3_bme_pgi/59302‑59157 TACCTCCTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGC > 4:364391/1‑150 CCTCCTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTA > 2:293856/1‑150 TCCTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAG > 2:815168/1‑150 TCCTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAG > 1:151178/1‑150 TCCTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAG > 2:348409/1‑150 CCTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGG < 4:21246/150‑1 CTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGT < 1:348409/150‑1 GATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGG > 1:183877/1‑150 ATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGG > 3:460372/1‑150 AGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGT > 4:157871/1‑150 GTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGG < 2:7649/145‑1 GTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGG > 1:7649/1‑145 TTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGC < 3:157871/150‑1 aAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCA > 4:424435/2‑150 TAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCA < 3:364391/150‑1 TAATAAAAACCCCCCCAAAAAAATTGACACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCA < 4:395542/150‑1 TAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACC < 2:183877/150‑1 TAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAG > 4:193951/1‑121 TAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAG < 3:193951/121‑1 CCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTA < 1:293856/150‑1 CCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCT > 1:143467/1‑135 CCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCT < 2:143467/135‑1 AAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTG < 3:424435/150‑1 TACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAAT < 1:595175/150‑1 GGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCC > 2:264437/1‑112 GGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCC < 1:264437/112‑1 GAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTC > 2:75262/1‑104 GAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTC < 1:75262/104‑1 TTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTA > 1:18477/1‑103 TTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTA < 2:18477/103‑1 tATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC < 2:296401/39‑1 tATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC > 1:296401/2‑40 AATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTC > 3:197590/1‑54 AATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTC < 4:197590/54‑1 TAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTATCAATTTTTTTGGGGGGGATT > 1:815168/1‑150 AGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGG > 2:210356/1‑45 AGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGG < 1:210356/45‑1 GTTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTATCAATTTTTTTGGGGGGGATTTTAT > 2:147023/1‑150 TTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCA > 2:851733/1‑112 TTGAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCA < 1:851733/112‑1 GAAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTATCAATTTTTTTGGGGGGGATTTTATTAA < 3:367971/150‑1 AAGGGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTATCAATTTTTTTGGGGGGGATTTTATTAAT < 1:147023/150‑1 GGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTATCAATTTTTTTGGGGGGGATTTTATTAATAAT > 4:244432/1‑150 GGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGT < 1:170136/102‑1 GGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGT > 2:170136/1‑102 GGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTT < 2:548405/66‑1 GGGCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTT > 1:548405/1‑66 GCGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTA > 2:297030/1‑116 GCGTTCCAGCCCCTTCAACCTTAGCTGATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTA < 1:297030/116‑1 TACCTCCTTATATGATGAGGTAATTATTATTAATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/59132‑59296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctaaggttgaaggggcGTTCCAGCCCCTTCAACCTTAGCTTATTCTGGCTCATTCAATAATTGCGTTGTCAGTAATTTGTTCAGCAGTACTTTTTTAGTAGCAACTTCTTCAGTAGCAACTCCTTTAGTATCAATTTTTTTGGGGGGGATTTTATTAATAAT < NC_000913_3_bme_pgi/59302‑59157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |