New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3248646NA (NA)8 (0.070) 7/282 15.7 NA noncoding (71/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
?CP009273 = 3248678 NA (NA)noncoding (103/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 169 total aligned reads displayed.

TGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCG  >  CP009273/3248530‑3248826
                                                                                                                                                    |                                                                                                                                                    
 gAAACGCGTTTAGCCGAGGGTGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATAGGGCa                                                                                                                                                     >  2:91700/1‑149 (MQ=255)
     cgcgTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAACTAAACAACCCGTAGGCCGGCCAAGATGCGCCAGCATCGCATACGCCACGAt                                                                                                                                                 >  2:213966/1‑149 (MQ=255)
        gTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATccc                                                                                                                                              <  2:787479/149‑1 (MQ=255)
           tAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaa                                                                                                                                           <  1:1951705/149‑1 (MQ=255)
            agatgAGGATCTAGATACCGCGGCGAGACAGGATACCGGGTGCGGGGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGAAACGAAGCCTCAGCATCGCATCCGGCCCGATCCCCaaa                                                                                                                                          >  2:901229/5‑149 (MQ=255)
                ggggATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAACACGCCTTATCCGGCCTACAAAATCCAACAACCTGAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCAGCCGGCACGATCCCCAAAACCt                                                                                                                                      <  2:59545/147‑1 (MQ=255)
                gAGGATGATGCTATCGCGTAAAGACAGGTTGCCTGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCTGACAAGATGCGCCAGCATCGCATCCGGCACTATCCCCAAAACCt                                                                                                                                      <  2:1834110/149‑1 (MQ=39)
                gAGGATGAAGCTACCGCGGAAAGACAGGTTGCCGGANGCGGCGAAAGCGCCTTCTACGGCCTACAAAATCCAACAACATTAACGAATTAAACACCCCGTAGGCCGAACAAGATGCGCCAGCATCGCAACCGGCACAATCCCCAAAACCt                                                                                                                                      <  2:37810/149‑1 (MQ=255)
                   gATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGc                                                                                                                                   >  2:51452/1‑149 (MQ=255)
                    aTGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACAATAACGAATGAAACAACCCCTACGCCGGACAAGATGCGCCAACATCGCAGCAGGCACCATCCCCAAAACCTGGCg                                                                                                                                  >  2:111074/1‑149 (MQ=38)
                    aTGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCATACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCg                                                                                                                                  >  2:1274887/1‑149 (MQ=255)
                       aaGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGttt                                                                                                                               <  1:1743986/149‑1 (MQ=255)
                         gCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTAt                                                                                                                             >  1:572032/1‑149 (MQ=255)
                         gCTACCGCGTAAAGACAGGTTACCGGATGCGACGAAAACGCCTTATCCGGCCTACAAAATCGAACAACATTAACGAATTAAAAAACCCGTAAGCCGGACAAAACACGCCAGCATCACATCCGGCACGAACCCCAAACCCTGGCGTTTac                                                                                                                             >  2:164137/1‑148 (MQ=255)
                           tACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCt                                                                                                                           >  1:1799059/1‑149 (MQ=255)
                            aCCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGCATTAAACAACCCGTAGGCCGGACAAGGTGCGCCAGCAACGCATCCGGCACGATCCCCACAACCTGCCGttcccccg                                                                                                                          >  2:1346962/1‑143 (MQ=38)
                            aCCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTg                                                                                                                          <  1:1565276/149‑1 (MQ=255)
                             ccGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAACACCTGGCGTTTAtatag                                                                                                                         >  2:1954818/1‑145 (MQ=255)
                              cgcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                                                                        <  1:1771527/149‑1 (MQ=255)
                                 gTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCtt                                                                                                                     <  2:1619681/149‑1 (MQ=255)
                                   aaaGAGAGGTTGCCGGATGCGGCGAACACGCCTTATCCGGCATACAAAATCCATCAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGc                                                                                                                   <  1:1516931/149‑1 (MQ=255)
                                       aCAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACACGACCGAATGAAACCACCCGTATGCCGGGTAAGATGCGCCCGCATCGCATCCGGCACGATCCCCAAAAGCTGGCGTTTATCTGGCCTTGCTCGc                                                                                                               <  2:504648/149‑1 (MQ=38)
                                        cAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGcc                                                                                                              <  1:81893/149‑1 (MQ=255)
                                        cAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCATACAAATTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGcc                                                                                                              <  1:93111/149‑1 (MQ=255)
                                        cAGGTTGCCGGATGCGGCGAAAACGCCTTATCAGACCTATAAAACCCAACAACATTAACGAATCAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGcc                                                                                                              <  1:856734/149‑1 (MQ=39)
                                           gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGACTAAAACAACCAGTAGGCCGGCCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACAAGACGCTTATCTGGCCTTGCTCGCCATa                                                                                                           >  1:52759/1‑149 (MQ=38)
                                            ttGACGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGGAGGCCGGCCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCGGGCGTTTATCTCGCCTTGCTCGCCATaa                                                                                                          >  1:298327/1‑149 (MQ=255)
                                                cGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAAtctc                                                                                                      <  1:607516/149‑1 (MQ=255)
                                                       ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTGGATAATc                                                                                               >  1:133347/1‑149 (MQ=255)
                                                       ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATc                                                                                               >  1:1274552/1‑149 (MQ=255)
                                                        gcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCt                                                                                              >  1:341300/1‑149 (MQ=255)
                                                         cgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTg                                                                                             <  2:1576924/149‑1 (MQ=255)
                                                          gAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCCTCCGGCAAGATCCCCAAAACCTGGCGTTTATCTGGCCTTCCCCGCCCTAAACCCCATAATCTGc                                                                                            >  2:107128/1‑149 (MQ=255)
                                                          gAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCATGCCCGCCAAAATCCCGACAAACTGc                                                                                            >  1:426333/1‑149 (MQ=39)
                                                              aCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGTACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAt                                                                                        >  1:1307544/1‑149 (MQ=255)
                                                              aCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAt                                                                                        >  1:110879/1‑149 (MQ=255)
                                                                     gtCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                                                 >  1:1006374/2‑149 (MQ=255)
                                                                     acccGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                                                 <  1:1630581/147‑1 (MQ=255)
                                                                     aTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                                                 >  1:427016/1‑149 (MQ=255)
                                                                     aTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                                                 >  1:1006285/1‑149 (MQ=255)
                                                                     aTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCACCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                                                 >  1:316249/1‑149 (MQ=255)
                                                                      gccGGCCTAAAAAGACCTCCACCATTAACGAATTAAACAGCCCGCAGGCCGGCCAAGCTGCGCCACCATCGCATCCGGCACGATCCCCACAACCTGGCGTTTATCTGGCCGTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgc                                                                                <  2:1220068/148‑1 (MQ=255)
                                                                       ccGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGTATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgct                                                                               <  1:1485630/149‑1 (MQ=255)
                                                                         ggCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAGCCGTTtgctgc                                                                             >  2:1528822/1‑149 (MQ=255)
                                                                         ggCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGACCGATCCCCAAACCCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgctgc                                                                             <  1:953474/149‑1 (MQ=255)
                                                                          tccTACAAATTCCAACAACATTAACGAATTAAGCAACCCGTAGGCCGGACAAGATGCGCCCGCATCGCAGCCGGCACGATCCCCAAAGCCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCa                                                                            <  1:213966/148‑1 (MQ=255)
                                                                          gCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCa                                                                            <  1:223122/149‑1 (MQ=255)
                                                                           ccaaCAAAACCCAGCAACATAAACGAATGAAACAACCCGTAGGCCGGACAAGAGGCGCCAGCATCGCATCCGGCACTAGCCCCGAAACCTGCCGCTTAGCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCAt                                                                           <  1:406049/146‑1 (MQ=37)
                                                                           ccTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATCATCTGCCGATCCGTTTGCTGCAt                                                                           >  1:478336/1‑149 (MQ=255)
                                                                               cAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGaa                                                                       <  1:139257/149‑1 (MQ=255)
                                                                                aaaaTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAAt                                                                      >  1:686855/1‑149 (MQ=255)
                                                                                   aTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCACAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGc                                                                   <  1:1411810/149‑1 (MQ=255)
                                                                                       aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGc                                                               >  2:1817895/1‑149 (MQ=255)
                                                                                       aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGc                                                               >  1:1189810/1‑149 (MQ=255)
                                                                                       aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGc                                                               >  2:1121707/1‑149 (MQ=255)
                                                                                          accactAACGAAGTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCGGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTaa                                                            <  2:1747496/144‑1 (MQ=255)
                                                                                            aaTTAACGAATTAAACACCCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACg                                                          <  1:688160/148‑1 (MQ=255)
                                                                                             aTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCACAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATCGCTTGCTAACGc                                                         >  2:1446119/1‑149 (MQ=255)
                                                                                             aTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCTGATCCGTTTCCTGCATCGAATGGCTTGCTAACGc                                                         <  1:997502/149‑1 (MQ=255)
                                                                                             aTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGc                                                         <  2:1516837/149‑1 (MQ=255)
                                                                                              ttAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGca                                                        <  2:1779198/149‑1 (MQ=255)
                                                                                               tAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCGCGAGCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGCATGGCTTGCTACCGcgc                                                       >  1:1818797/1‑147 (MQ=255)
                                                                                                aaCGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcaca                                                      <  1:602562/149‑1 (MQ=255)
                                                                                                 aCGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTAGCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcacac                                                     <  2:1735757/149‑1 (MQ=255)
                                                                                                 aCGAAGTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcacac                                                     <  2:263303/149‑1 (MQ=255)
                                                                                                  cGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcacaca                                                    >  2:617215/1‑149 (MQ=255)
                                                                                                    aaTTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGCTTGCTGCATCGAATGGCTTGCTAACGcacaccgc                                                  >  2:292967/1‑146 (MQ=255)
                                                                                                       tAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCACGCCATAATCTCGTTAATCTGCCGATCCGTTTGCTGCCTCGAATGGCTTGCTAACGCACACAGGTTg                                               <  1:1198833/149‑1 (MQ=255)
                                                                                                       tAAACAACCCGCAGGCCGGACAAGATGCGCCAGCACCGCATCCGGCACGACCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTg                                               <  1:497867/149‑1 (MQ=255)
                                                                                                        aaccaccccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTgg                                              <  1:1226923/143‑1 (MQ=255)
                                                                                                        aaaCAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTgg                                              <  1:1585831/149‑1 (MQ=255)
                                                                                                           caacCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCaa                                           >  1:519806/1‑149 (MQ=255)
                                                                                                            aacCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAAt                                          <  2:33701/149‑1 (MQ=255)
                                                                                                             acCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATc                                         <  2:1318965/149‑1 (MQ=255)
                                                                                                             acCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATc                                         >  2:144239/1‑149 (MQ=255)
                                                                                                               ccGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCGTGCTAACGCACACAGGTTGGCAATCgg                                       >  1:1153834/1‑148 (MQ=255)
                                                                                                                 gTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACt                                     <  1:1644083/149‑1 (MQ=255)
                                                                                                                   aGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCCGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGCATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGc                                   <  1:1274887/149‑1 (MQ=255)
                                                                                                                     gCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTc                                 >  2:578131/1‑149 (MQ=255)
                                                                                                                     gCCGGACAAGAGGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACCGGTTGGCAATCGACCGCTc                                 >  2:1593883/1‑149 (MQ=255)
                                                                                                                       cGGACAAGGTGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCaa                               <  2:1455525/149‑1 (MQ=255)
                                                                                                                        ggACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACCGGTTGGCAATCGACTGCTCAAc                              >  1:1714672/1‑149 (MQ=255)
                                                                                                                        ggACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCCATCGTCTGCTCAAc                              >  1:1714671/1‑149 (MQ=255)
                                                                                                                           cAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAAcatc                           <  1:1556245/149‑1 (MQ=255)
                                                                                                                            aaGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATACTCTCGATAATCTGCCGATCCGTTTGCTGCATCGCATGGCTTGCTAACGCCCACAGGTTGGCAATCGACTGCTCAAcatca                          >  1:671674/1‑149 (MQ=255)
                                                                                                                              gATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATg                        <  2:1799059/149‑1 (MQ=255)
                                                                                                                              gATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATg                        <  2:1307544/149‑1 (MQ=255)
                                                                                                                              gATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAAAGGCTTTGCAACGCACACAGGTTGGCAATCGACTGCTCAACATCATg                        >  1:858239/1‑149 (MQ=255)
                                                                                                                               aTGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTGTCTGGCCTTTCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATgc                       <  2:1183546/149‑1 (MQ=255)
                                                                                                                                   gcCAGCATCGCCTCCGGCACGACCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGGATGGCTTGCTAACGCACATAGGTTCGCAATCGACTGCTCAACATCATGCGCca                   <  1:1088787/149‑1 (MQ=255)
                                                                                                                                   gcCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGATGGCAATCGACTGCTCAACATCATGCGCca                   >  1:1012867/1‑149 (MQ=255)
                                                                                                                                         atcgcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGCTTGCTGCATCGAATGGCTTGCTAACGCACACAGTTTGGCCATCGACTGCTCAACATCTTGCGCCACAATcc             <  1:1346962/149‑1 (MQ=255)
                                                                                                                                          tcgcctcCGGCACGCTCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCCCGAAAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATccc            <  2:1669516/149‑1 (MQ=255)
                                                                                                                                          tcgcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACCATccc            >  2:752752/1‑149 (MQ=255)
                                                                                                                                           cgcatcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCt           >  1:772049/1‑149 (MQ=255)
                                                                                                                                             catcCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTc         >  1:1703072/1‑149 (MQ=255)
                                                                                                                                                 cGGCATGATCCCCAAAACCCGGCGGTTATCTGGCCTTGCTCGCCATCATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGCCACTCGACTGCTCAACATCATGCGCCACAAGCCCTTCATTg     <  2:918870/149‑1 (MQ=255)
                                                                                                                                                 cGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTg     >  2:1235286/1‑149 (MQ=255)
                                                                                                                                                    cACGATCCCCAAACCCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATACTCTGCCGCTCCGTTTGCTGCATCGAATGGCTTGCTAACGCACCCAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCg  <  2:402206/149‑1 (MQ=255)
                                                                                                                                                    cACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCg  <  1:1509227/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGCTCAACATCATGCGCCACAATCCCTTCATTGCCG  >  CP009273/3248530‑3248826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.