New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3248646NA (NA)8 (0.070) 7/282 15.7 NA noncoding (71/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
?CP009273 = 3248678 NA (NA)noncoding (103/103 nt) REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 168 total aligned reads displayed.

TTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGC  >  CP009273/3248498‑3248793
                                                                                                                                                    |                                                                                                                                                   
ttGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAg                                                                                                                                                     <  1:79035/149‑1 (MQ=255)
ttGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAg                                                                                                                                                     <  1:1461143/149‑1 (MQ=255)
     cgagcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACACGTAGGTCgg                                                                                                                                                >  1:1204576/1‑149 (MQ=255)
         cTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACaa                                                                                                                                            >  2:583124/1‑149 (MQ=255)
          tGGAAGCTATCGTCGCGGATGCTGAAACGCGGTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAg                                                                                                                                           <  2:776128/149‑1 (MQ=255)
           ggAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTCCAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGa                                                                                                                                          >  2:30018/1‑149 (MQ=255)
            gAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGAt                                                                                                                                         >  2:1485630/1‑149 (MQ=255)
            gAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGAt                                                                                                                                         >  2:410186/1‑149 (MQ=255)
            gAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAACCCAACAACATTAACGCATTAAACAACCCGTAGGCCGAACAAGAt                                                                                                                                         >  1:1130505/1‑149 (MQ=255)
                cTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgcgc                                                                                                                                     >  1:33701/1‑149 (MQ=255)
                cTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAACCCAACAAAATTAAAGAATTAAACAACCAGTAGGCCGGACAAGATacgc                                                                                                                                     >  1:263303/1‑149 (MQ=39)
                 tATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAACCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGcc                                                                                                                                    <  2:1364881/149‑1 (MQ=255)
                 tATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGcc                                                                                                                                    >  1:1689856/1‑149 (MQ=255)
                 tATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGcc                                                                                                                                    <  1:1957359/149‑1 (MQ=255)
                  aTCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCa                                                                                                                                   >  2:289668/1‑149 (MQ=255)
                    cgtcgCGGATGCTGAAACGCGTCTAGCCGGGGATGAAGCTACCGCGTCAAGACAGGTTGCCGGATGCGGCGCAACCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAACCAACCCGTCGCCCGGCCAACATGCGCCAgc                                                                                                                                 >  2:476643/1‑149 (MQ=38)
                         cgGATGCTGAACCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAATTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgc                                                                                                                            <  1:1471219/149‑1 (MQ=255)
                         cgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgc                                                                                                                            >  1:1365978/1‑149 (MQ=255)
                         cgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAACCGTAAGCCGGCCAAGATGCGCCAgcatcgc                                                                                                                            >  1:1849721/1‑149 (MQ=255)
                          ggATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgca                                                                                                                           <  1:1285669/149‑1 (MQ=255)
                          ggATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCCGACAAGATGCGCCAgcatcgca                                                                                                                           <  2:1641447/149‑1 (MQ=255)
                            aTGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgctggcgcatcttgtc                                                                                                                         <  2:971861/149‑15 (MQ=255)
                            aTGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgcatc                                                                                                                         >  2:208714/1‑149 (MQ=255)
                               cTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCgg                                                                                                                      >  1:1779198/1‑149 (MQ=255)
                                tGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACATCCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGc                                                                                                                     >  1:857877/1‑149 (MQ=255)
                                tGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGc                                                                                                                     >  1:678537/1‑149 (MQ=255)
                                 gAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCa                                                                                                                    <  1:64905/149‑1 (MQ=255)
                                   aaCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACg                                                                                                                  >  1:1178001/1‑149 (MQ=255)
                                        gTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATccc                                                                                                             <  2:787479/149‑1 (MQ=255)
                                           tAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaa                                                                                                          <  1:1951705/149‑1 (MQ=255)
                                            agatgAGGATCTAGATACCGCGGCGAGACAGGATACCGGGTGCGGGGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGAAACGAAGCCTCAGCATCGCATCCGGCCCGATCCCCaaa                                                                                                         >  2:901229/5‑149 (MQ=255)
                                                ggggATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAACACGCCTTATCCGGCCTACAAAATCCAACAACCTGAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCAGCCGGCACGATCCCCAAAACCt                                                                                                     <  2:59545/147‑1 (MQ=255)
                                                gAGGATGAAGCTACCGCGGAAAGACAGGTTGCCGGANGCGGCGAAAGCGCCTTCTACGGCCTACAAAATCCAACAACATTAACGAATTAAACACCCCGTAGGCCGAACAAGATGCGCCAGCATCGCAACCGGCACAATCCCCAAAACCt                                                                                                     <  2:37810/149‑1 (MQ=255)
                                                   gATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGc                                                                                                  >  2:51452/1‑149 (MQ=255)
                                                    aTGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACAATAACGAATGAAACAACCCCTACGCCGGACAAGATGCGCCAACATCGCAGCAGGCACCATCCCCAAAACCTGGCg                                                                                                 >  2:111074/1‑149 (MQ=38)
                                                    aTGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCATACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCg                                                                                                 >  2:1274887/1‑149 (MQ=255)
                                                     tGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGt                                                                                                <  1:718491/149‑1 (MQ=255)
                                                       aaGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCCCGATCCCCAAAACCTGGCGttt                                                                                              >  2:1509227/1‑149 (MQ=255)
                                                       aaGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGttt                                                                                              <  1:1743986/149‑1 (MQ=255)
                                                         gCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTAt                                                                                            >  1:572032/1‑149 (MQ=255)
                                                           tACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCt                                                                                          >  1:1799059/1‑149 (MQ=255)
                                                            aCCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGCATTAAACAACCCGTAGGCCGGACAAGGTGCGCCAGCAACGCATCCGGCACGATCCCCACAACCTGCCGttcccccg                                                                                         >  2:1346962/1‑143 (MQ=38)
                                                            aCCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTg                                                                                         >  2:251031/1‑149 (MQ=255)
                                                            aCCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTg                                                                                         <  1:1565276/149‑1 (MQ=255)
                                                             ccGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAACACCTGGCGTTTAtatag                                                                                        >  2:1954818/1‑145 (MQ=255)
                                                                 gTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCtt                                                                                    <  2:1619681/149‑1 (MQ=255)
                                                                   aaaGAGAGGTTGCCGGATGCGGCGAACACGCCTTATCCGGCATACAAAATCCATCAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGc                                                                                  <  1:1516931/149‑1 (MQ=255)
                                                                        cAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCATACAAATTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGcc                                                                             <  1:93111/149‑1 (MQ=255)
                                                                        cAGGTTGCCGGATGCGGCGAAAACGCCTTATCAGACCTATAAAACCCAACAACATTAACGAATCAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGcc                                                                             <  1:856734/149‑1 (MQ=39)
                                                                           gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGACTAAAACAACCAGTAGGCCGGCCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACAAGACGCTTATCTGGCCTTGCTCGCCATa                                                                          >  1:52759/1‑149 (MQ=38)
                                                                                 ggATGCGGCGAAACCGCCTTATCCGGCCTACCAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCg                                                                    <  1:970297/149‑1 (MQ=255)
                                                                                   aTGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTACACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGAt                                                                  <  2:533933/149‑1 (MQ=255)
                                                                                     gcggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTTGTCATAATCTCGATaa                                                                >  1:1568881/1‑149 (MQ=255)
                                                                                       ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATc                                                              >  1:1608248/1‑149 (MQ=255)
                                                                                       ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATc                                                              >  1:1274552/1‑149 (MQ=255)
                                                                                        gcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCt                                                             >  1:341300/1‑149 (MQ=255)
                                                                                        gcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCt                                                             >  1:1318965/1‑149 (MQ=255)
                                                                                         cgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTg                                                            <  2:1576924/149‑1 (MQ=255)
                                                                                         cgAAAACGCCTTATCCGGCCTACAAAACCGTAAACGATGAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCGTAATCTCGATAATCTg                                                            >  2:917503/1‑149 (MQ=38)
                                                                                          gAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCCTCCGGCAAGATCCCCAAAACCTGGCGTTTATCTGGCCTTCCCCGCCCTAAACCCCATAATCTGc                                                           >  2:107128/1‑149 (MQ=255)
                                                                                          gAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGc                                                           <  2:1178001/149‑1 (MQ=255)
                                                                                          gAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCATGCCCGCCAAAATCCCGACAAACTGc                                                           >  1:426333/1‑149 (MQ=39)
                                                                                              aCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGTACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAt                                                       >  1:1307544/1‑149 (MQ=255)
                                                                                               cGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTCTATCTGGCCTTGCTCCCCATAAACTCGACAACCCGCCGacc                                                      >  2:291034/1‑147 (MQ=38)
                                                                                                gCCTTATCCTGCCTACAAAATCCAATAACATTAACGAATTAAACAACTCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATcc                                                     <  2:1096753/149‑1 (MQ=255)
                                                                                                gCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGGTTATCTGGCCTTGCTCGCCATAATCTCGATAACCTGCCGATcc                                                     >  2:1263617/1‑149 (MQ=255)
                                                                                                     gtCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                >  1:1006374/2‑149 (MQ=255)
                                                                                                     aTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                >  1:427016/1‑149 (MQ=255)
                                                                                                     aTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                >  1:1006285/1‑149 (MQ=255)
                                                                                                     aTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCACCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtg                                                >  1:316249/1‑149 (MQ=255)
                                                                                                       ccGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGTATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgct                                              <  1:1485630/149‑1 (MQ=255)
                                                                                                        cGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgctg                                             >  1:1709793/1‑149 (MQ=255)
                                                                                                         ggCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGAGCCGTTtgctgc                                            >  2:1528822/1‑149 (MQ=255)
                                                                                                          tccTACAAATTCCAACAACATTAACGAATTAAGCAACCCGTAGGCCGGACAAGATGCGCCCGCATCGCAGCCGGCACGATCCCCAAAGCCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCa                                           <  1:213966/148‑1 (MQ=255)
                                                                                                           ccaaCAAAACCCAGCAACATAAACGAATGAAACAACCCGTAGGCCGGACAAGAGGCGCCAGCATCGCATCCGGCACTAGCCCCGAAACCTGCCGCTTAGCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCAt                                          <  1:406049/146‑1 (MQ=37)
                                                                                                           ccTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATCATCTGCCGATCCGTTTGCTGCAt                                          >  1:478336/1‑149 (MQ=255)
                                                                                                           catACAAAACCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCAt                                          <  1:1255599/147‑1 (MQ=255)
                                                                                                               cAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGaa                                      <  1:139257/149‑1 (MQ=255)
                                                                                                                      caacaaCATAAACGGATTAAACAACCCGTAGGCCCGACAAGATGCGCCATCGTCGCATCCGGCACGATCCCCAAAACCGGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTg                               <  2:1844422/149‑1 (MQ=255)
                                                                                                                       aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCCTCGAATGGCTTGc                              >  2:1817961/1‑149 (MQ=255)
                                                                                                                       aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGc                              >  2:1817895/1‑149 (MQ=255)
                                                                                                                       aacaacATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGc                              >  1:1189810/1‑149 (MQ=255)
                                                                                                                        acaacaTTAACGAATTAAACAGCCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCCATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCt                             >  1:1394476/1‑149 (MQ=255)
                                                                                                                          accactAACGAAGTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCGGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTaa                           <  2:1747496/144‑1 (MQ=255)
                                                                                                                            aaTTAACGAATTAAACACCCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACg                         <  1:688160/148‑1 (MQ=255)
                                                                                                                             aTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCTGATCCGTTTCCTGCATCGAATGGCTTGCTAACGc                        <  1:997502/149‑1 (MQ=255)
                                                                                                                              ttAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGca                       <  2:1779198/149‑1 (MQ=255)
                                                                                                                                aaCGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcaca                     <  1:602562/149‑1 (MQ=255)
                                                                                                                                 aCGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTAGCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcacac                    <  2:1735757/149‑1 (MQ=255)
                                                                                                                                  cGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGcacaca                   >  2:617215/1‑149 (MQ=255)
                                                                                                                                       tAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCACGCCATAATCTCGTTAATCTGCCGATCCGTTTGCTGCCTCGAATGGCTTGCTAACGCACACAGGTTg              <  1:1198833/149‑1 (MQ=255)
                                                                                                                                       tAAACAACCCGCAGGCCGGACAAGATGCGCCAGCACCGCATCCGGCACGACCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTg              <  1:497867/149‑1 (MQ=255)
                                                                                                                                        aaaCAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGTCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCCCACAGGTTgg             >  1:275487/1‑149 (MQ=255)
                                                                                                                                           ccacCCGGAGGCCGGACAAGGTGCGCCGGCATCCCATCCGGCACGATCCCCAAAACCTGGCGTTTATGTGGCCGTGGTCGGCATAATCTCGATAATCTGCCGGTCCGTTTGCTGCATCGAATGGCGTGCTAACGCACACAGGTTGGCaa          <  2:1580837/147‑1 (MQ=255)
                                                                                                                                           caacCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCaa          >  1:519806/1‑149 (MQ=255)
                                                                                                                                             acCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATc        >  2:144239/1‑149 (MQ=255)
                                                                                                                                             acCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATc        <  2:1318965/149‑1 (MQ=255)
                                                                                                                                                 gTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACt    <  1:1644083/149‑1 (MQ=255)
                                                                                                                                                 gTAGGCCGGACAAGATGCGCCAGCATCGCAACCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTCCTACCGCACACAGGTTGGCAATCGACt    >  1:1028368/1‑149 (MQ=255)
                                                                                                                                                  tAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTg   <  1:1121707/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGCAATCGACTGC  >  CP009273/3248498‑3248793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.