| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3248646 | NA (NA) | 8 (0.070) | 7/282 | 15.7 | NA | noncoding (71/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 3248678 | NA (NA) | noncoding (103/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3248503‑3248646‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCATCCTCGGCTAAACGCGTTTCAGCAT < CP009273/3248678‑3248526 CGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACACGTAGGTCGG > 1:1204576/1‑149 GAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGA > 2:554214/1‑149 GCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGAGTAAAGGCAGGGTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAGCCACATTGACGAAGTAAACAACCCGTAGGCCGGgca > 1:661757/1‑146 TGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGATGCG > 2:921809/1‑149 GATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATGAACGAATTAAACAACCCGTAGGCCGGACAAGATGCTGGCGCATCTTGT < 2:1880280/149‑1 ATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGATGCGATGCTGGCGCATCTTGTC < 1:1550533/149‑1 ATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCTGGCGCATCTTGTC < 2:971861/149‑1 tgcAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGATGCGATGCTGGCGCATCTTGTCCGGC < 1:1506208/146‑1 GAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGATGCGATGCTGGCGCATCTTGTCCGGCC < 1:921809/149‑1 GCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGG < 1:801234/149‑1 GATGAAGCTACCGCGTAAAGACAGGTCGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGTCTCAAGCAACCGGTAGGCCGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCG < 1:281624/149‑1 tgccctATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCACCCTCGGCTAAACGCGTTTC < 2:91700/143‑1 GCCGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCATCCTCGGCTAAACGCGTTTCA < 1:678537/149‑1 GCCGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCATCCTCGGCTAAACGCGTTTCA < 1:1669516/149‑1 GCCGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGATGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCATCCTCGGCTAAACGCGTTTCA < 1:857877/149‑1 CCGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCATCCTCGGCTAAACGCGTTTCAG < 1:1779198/149‑1 CGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTAAGCGGTAGCTTCATCCTCGGCTAAACGCGTTTaacc > 2:1013333/1‑145 GATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCATCCTCGGCTAAACGCGTTTCAGCAT < 2:208714/149‑1 CGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3248503‑3248646‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGATGCTGGCGCATCTTGTCCGGCCTACGGGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCATCCTCGGCTAAACGCGTTTCAGCAT < CP009273/3248678‑3248526 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |