mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 36.5% | 89.3 / 83.4 | 87 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 123 (1.250) | 6 (0.070) | 6/260 | 10.5 | 4.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 128 (1.390) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4262741 | 119 (1.210) | 6 (0.060) | 6/266 | 10.6 | 5.0% | intergenic (+35/‑99) | dusA/pspG | tRNA‑dihydrouridine synthase A/phage shock protein G |
| ? | NC_000913 | = 4262755 | 115 (1.220) | intergenic (+49/‑85) | dusA/pspG | tRNA‑dihydrouridine synthase A/phage shock protein G | |||||
| * | ? | NC_000913 | = 4542690 | 123 (1.250) | 5 (0.050) | 5/260 | 11.0 | 4.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 126 (1.370) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 739779 | 112 (1.140) | 5 (0.050) | 5/260 | 11.0 | 4.6% | coding (273/1419 nt) | phr | deoxyribodipyrimidine photolyase, FAD‑binding |
| ? | NC_000913 | = 739800 | 104 (1.130) | coding (294/1419 nt) | phr | deoxyribodipyrimidine photolyase, FAD‑binding | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.070) | 5/260 | 11.0 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4165491 = | 123 (1.250) | 5 (0.050) | 5/264 | 11.1 | 4.0% | coding (64/858 nt) | murI | glutamate racemase |
| ? | NC_000913 | 4165527 = | 122 (1.300) | coding (100/858 nt) | murI | glutamate racemase | |||||
| * | ? | NC_000913 | 2977668 = | 105 (1.060) | 5 (0.050) | 5/266 | 11.2 | 4.5% | coding (1232/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding |
| ? | NC_000913 | 2977705 = | 114 (1.210) | coding (1195/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding | |||||
| * | ? | NC_000913 | 2675795 = | 108 (1.100) | 6 (0.060) | 5/268 | 11.2 | 5.3% | intergenic (‑34/+32) | yphC/yphD | putative Zn‑dependent NAD(P)‑binding oxidoreductase/putative sugar ABC transporter permease |
| ? | NC_000913 | 2675817 = | 110 (1.160) | intergenic (‑56/+10) | yphC/yphD | putative Zn‑dependent NAD(P)‑binding oxidoreductase/putative sugar ABC transporter permease | |||||
| * | ? | NC_000913 | 3067310 = | 79 (0.800) | 4 (0.040) | 4/258 | 11.6 | 5.5% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | NC_000913 | 3067334 = | 64 (0.700) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
| * | ? | NC_000913 | = 2270601 | 110 (1.120) | 4 (0.040) | 4/258 | 11.6 | 3.8% | intergenic (+56/‑125) | mepS/rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | = 2270605 | 102 (1.110) | intergenic (+60/‑121) | mepS/rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||