Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
19 4 8
21 3 5
23 4 7
4 12 22

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 59 257
Multiple Base Substitutions 0 0
Deletions 5 25
Insertions 1 15
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 65 297

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 530 0 216.9 7771364 96.9% 7530451 90.7
A0 F0 I1 R1 21 0 177.5 6211486 97.6% 6062410 91.0
A19 F14 I0 R1 42 0 69.8 1554972 96.4% 1498993 141.0
A19 F14 I1 R1 22 0 131.2 2830606 96.5% 2731534 148.0
A19 F57 I0 R1 30 0 35.6 800162 95.7% 765755 140.9
A19 F57 I1 R1 23 0 129.1 2698390 96.2% 2595851 149.0
A19 F106 I0 R1 35 0 30.0 670850 95.5% 640661 140.9
A19 F106 I1 R1 27 0 57.4 1363720 95.8% 1306443 135.0
A19 F166 I0 R1 47 0 63.0 1389156 95.7% 1329422 140.9
A19 F166 I1 R1 28 0 91.5 1999278 96.0% 1919306 141.0
A21 F20 I0 R1 49 0 83.0 1834642 96.0% 1761256 141.0
A21 F20 I1 R1 22 0 87.2 1874462 96.3% 1805106 148.9
A21 F63 I0 R1 37 0 31.8 718920 95.7% 688006 140.9
A21 F63 I1 R1 24 0 121.5 2755866 96.5% 2659410 141.0
A21 F117 I1 R1 27 0 126.2 2957298 92.6% 2738457 136.3
A23 F20 I0 R1 37 0 75.7 1681216 95.7% 1608923 141.0
A23 F20 I1 R1 23 0 104.0 2230032 95.9% 2138600 148.9
A23 F59 I0 R1 34 0 33.7 751148 95.5% 717346 140.9
A23 F59 I1 R1 23 0 28.6 559496 98.6% 551663 149.0
A23 F110 I0 R1 17 0 6.1 129814 98.7% 128126 141.0
A23 F110 I1 R1 27 0 27.0 575272 98.6% 567218 141.0
A23 F171 I0 R1 77 0 151.8 3400288 94.4% 3209871 139.7

Mutation Needle Plot

Mutation Targets

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