Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 3
2 3 3
3 3 4
4 3 4
5 13 15

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 16 52
Multiple Base Substitutions 0 0
Deletions 15 107
Insertions 5 29
Mobile Element Insertions 3 31
Amplifications 17 17
Gene Conversions 0 0
Inversions 0 0
Total 56 236

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 13 0 200.8 6532156 95.7% 6251273 149.6
A1 F10 I1 R1 17 0 35.5 1400684 96.0% 1344656 125.1
A1 F40 I1 R1 14 0 36.6 1483340 95.8% 1421039 121.0
A1 F70 I1 R1 16 0 88.3 3175360 97.6% 3099151 142.7
A2 F7 I1 R1 15 0 40.7 1502958 96.8% 1454863 131.3
A2 F35 I1 R1 16 0 32.3 1216216 95.7% 1163918 129.5
A2 F75 I1 R1 16 0 93.9 3347122 97.6% 3266791 142.8
A3 F8 I1 R1 15 0 33.9 1248722 96.3% 1202519 132.4
A3 F37 I1 R1 17 0 34.0 1264396 96.3% 1217613 131.3
A3 F76 I0 R1 77 0 105.5 3718502 98.6% 3666442 138.9
A3 F76 I1 R1 17 0 81.7 2906380 97.4% 2830814 142.3
A4 F12 I1 R1 13 0 33.4 1236664 96.3% 1190907 130.5
A4 F42 I1 R1 13 0 39.3 1468798 96.3% 1414452 129.3
A4 F81 I0 R1 92 0 100.9 3357982 98.2% 3297538 142.9
A4 F81 I1 R1 16 0 94.3 3198960 98.0% 3134980 142.0

Mutation Needle Plot

Mutation Targets

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