BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 437880	593 (0.430)	405 (0.230) +ATAT	87/188	25.7	34.8%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	437881 =	802 (0.450)	405 (0.230) +ATAT	87/188	25.7	34.8%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1240 total aligned reads displayed.

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

 aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAAGCAAAGCAAAAACCTCCAATTTACCTATAGAGTTAAT‑‑G‑‑‑‑at                                                                                                                                >  2:932513/1‑128 (MQ=255)

 aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑at                                                                                                                                <  2:3162797/128‑1 (MQ=255)

    cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTATAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atata                                                                                                                             >  1:168278/1‑128 (MQ=255)

      tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatata                                                                                                                           >  2:2536203/1‑128 (MQ=255)

      tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTATAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAAACTCCATATTACCTATAGAGTAAAT‑‑G‑‑‑‑atatata                                                                                                                           >  1:1359749/1‑128 (MQ=255)

        tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatata                                                                                                                         >  2:3787777/1‑128 (MQ=255)

        tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatata                                                                                                                         >  2:3464209/1‑128 (MQ=255)

         aactacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatat                                                                                                                        >  2:1573410/12‑128 (MQ=255)

            tacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATTTTTTAGGAAATGAAGCAAAGCAAAAACATCCATAGTACCTATAGAGTTATT‑‑G‑‑‑‑atatatatatata                                                                                                                     >  2:1254839/9‑128 (MQ=255)

            tacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAATAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atataaatatata                                                                                                                     >  2:234522/9‑128 (MQ=255)

             acaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑‑‑atatatatatatat                                                                                                                    >  1:2028439/8‑128 (MQ=255)

               aGTTGTAATTTTAATTTTTAATAAATATTAGATATAAAAATTTTATTTTTAAAATAAATATTTTATTAAATGTATCAAATAAAAAACATCCATATAAACTATAGAGTTAAA‑‑G‑‑‑‑atatatatatatatat                                                                                                                  <  1:2791208/128‑1 (MQ=255)

               aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatat                                                                                                                  <  2:2383123/128‑1 (MQ=255)

                  tGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAATCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatata                                                                                                               >  2:2225206/1‑128 (MQ=255)

                   gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatat                                                                                                              >  1:3598226/1‑128 (MQ=255)

                   gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatat                                                                                                              >  1:3267391/1‑128 (MQ=255)

                    tAATTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATTAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatata                                                                                                             <  1:3773034/128‑1 (MQ=255)

                     taGTTTCTTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATATATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatat                                                                                                            <  2:1992936/127‑1 (MQ=255)

                     aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatat                                                                                                            >  1:176377/1‑128 (MQ=255)

                     aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGAAAAGAAAAAACCTCAATATTACATATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatataaat                                                                                                            >  1:213385/1‑128 (MQ=255)

                         ttaaTTTTTAATATATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGAAAAGAAAAAACATCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatat                                                                                                        <  2:1742814/125‑1 (MQ=255)

                           cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatatat                                                                                                      >  1:1294448/1‑128 (MQ=255)

                               tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatattaaaga                                                                                                  >  2:2059999/1‑122 (MQ=255)

                                ttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatgcaagcgat                                                                                                 <  1:506614/128‑10 (MQ=255)

                                  aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCg                                                                                               >  1:3156188/1‑128 (MQ=255)

                                      aataTTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGATATGTAGAAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCa                                                                                           <  2:181156/128‑1 (MQ=255)

                                        tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCa                                                                                           >  2:1078940/1‑128 (MQ=255)

                                         atTAGAAATAAAAATTTTATTATTAAAATAAAAATTTTATTAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAg                                                                                          <  1:1054055/128‑1 (MQ=255)

                                          ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCAt                                                                                       <  2:3871278/128‑1 (MQ=255)

                                           tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATa                                                                                      >  1:2680098/1‑128 (MQ=255)

                                           tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTAAAGCGATCAGCTTa                                                                                      >  1:2541041/1‑128 (MQ=255)

                                              aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATAATCTAGCGATCAACATataa                                                                                   >  2:1214881/1‑128 (MQ=255)

                                               aaTAAAAATTGTATTTTTAAAATATATATTTTAGGAAAAGAAGCACAGAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAAt                                                                                  <  1:3646909/128‑1 (MQ=255)

                                                  aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATCAAAGCGATCAGCATAAAATgtt                                                                               >  2:3213296/1‑126 (MQ=255)

                                                   aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCATCATAATATGGTg                                                                              >  1:625342/1‑128 (MQ=255)

                                                    aaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATAT‑‑‑‑‑T‑CAAGCTATCAGCATAAAATGGTGAAATTTa                                                                       >  2:3041464/1‑128 (MQ=255)

                                                     aaTTGTATTTTTAATATAAATATTTTATGTAATGAATCTAAGCAAAAAACTACATATTACCTATAGAGTTTAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGaa                                                                            <  1:1441828/128‑1 (MQ=255)

                                                     aaTTGTATTTTTAAAATATATATTTTATGAAATGAATCAAATCAAAAACCTACATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                          <  1:996812/128‑1 (MQ=255)

                                                         gTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATAAACATAAAAAAGTGatatat                                                                        >  2:501018/1‑126 (MQ=255)

                                                          tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCTAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCAAATAATTGTGACAtt                                                                         >  1:1199142/1‑128 (MQ=255)

                                                           aTTTTTAAAATAAATATTTTAGGATATTAATCAAATCAAAAACCTCCATATTACCTATAGAGTTATT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAg                                                                      <  2:3540540/128‑1 (MQ=255)

                                                           aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAg                                                                      >  1:1941755/1‑128 (MQ=255)

                                                             ttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATCAAATAGATCAGAAGAAAATCGTGATatatatat                                                                    >  1:678895/1‑128 (MQ=255)

                                                              tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCTATCAGCATAAAATGGTGAATTTTATATATg                                                                 >  2:1152119/1‑128 (MQ=255)

                                                                ataaatatatATTTTATTAAATAATTCTAATCAAAAACATACATATTACATATAGAGATATT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTATATCTg                                                                 <  1:905952/126‑1 (MQ=255)

                                                                 aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatatgcaatcgat                                                                                               >  1:2352802/1‑88 (MQ=255)

                                                                 aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt                                                              >  1:1238209/1‑128 (MQ=255)

                                                                  aaataaatATTTTATGAAATGAAGAAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  1:3108491/128‑1 (MQ=255)

                                                                    ataaataTTTTATGAAATTAATCAAAGAAAAAACCTCCATATAACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                             <  1:2424155/128‑1 (MQ=255)

                                                                      aaataTTTTATTATATTAATAAAATAAAAAAAATCAATATTATCTATAGAGTTATTTAT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                             <  2:3605001/128‑1 (MQ=255)

                                                                         aatTTTATGAAATGAACCTCATCTAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCt                                                        <  1:2196543/127‑1 (MQ=255)

                                                                          atattattcaaTGAATCAAAGAAAAAACATCCATATTACCTATAGATTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                     <  2:2774768/119‑1 (MQ=255)

                                                                          atTTTATTAAATGAAGAAAAGCAAAAACCTCAATATTAACTATAGAGTTAAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCtt                                                       <  1:2979331/128‑1 (MQ=255)

                                                                           ttttATTAAATGAATCATAGCAAAAACATCCATATTATCTATAGAGATAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCt                                                        <  1:1552998/128‑1 (MQ=255)

                                                                           ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATTAATTGGTGAAATATATCTCTGTTTTGGTATTa                                                      >  2:1653769/1‑128 (MQ=255)

                                                                            tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATGGTGATATTTATATCTGAGTTTGTCTTaa                                                     >  1:3841126/1‑128 (MQ=255)

                                                                            tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAt                                                   >  2:64944/1‑128 (MQ=255)

                                                                             ttattaaaTGAAGCAAATCAAAAACATCCATATTAACTATAGAGATAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                    <  1:101/123‑1 (MQ=255)

                                                                             ttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATA‑A‑ATATATATATATGCAAGCGATCAGGATAAATTGGTGATTATTATATCTGAGTTgctaattaatt                                                  >  1:2756181/1‑118 (MQ=255)

                                                                             atAGGAAATGAATCAAAGAAAAAACCTACATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                    <  2:2932020/127‑1 (MQ=255)

                                                                               aGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGTGTTGGTCTTaaa                                                    >  1:2084408/1‑128 (MQ=255)

                                                                                gtaaaTGAAGAAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                               <  2:2707394/126‑1 (MQ=255)

                                                                                ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGTTGAAATATAGATCTGAGTTGGTCTTAAAt                                                   >  1:947933/1‑128 (MQ=255)

                                                                                   aaTGAAGCAAATCAAAAACCTCTATATTATATATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttt                                          <  2:2633640/128‑1 (MQ=255)

                                                                                   aaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAATCTATCAGAATAAAATAGTTAAATATATATCTGAGTTTGTCTTATAttttttgt                                            >  2:1319229/1‑123 (MQ=255)

                                                                                     ttaatcaaatcaaaAACCTCAATATTACATATAGAGTTAAT‑‑G‑‑‑‑AT‑T‑TATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttt                                          <  1:440107/123‑1 (MQ=255)

                                                                                       aagcaaagcaAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGt                                            <  1:3702987/128‑1 (MQ=255)

                                                                                         ccaaagcaaaAACCTCAATATAAACTATAGAGTTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttat                                      <  2:3722145/127‑1 (MQ=255)

                                                                                           aaagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCTATCAGAATAAAATTGTGAATTTTATATATTAGTTGGTATTAATTTTGTAGTtattat                                      >  2:1903926/1‑128 (MQ=255)

                                                                                           aaagcaaaAACCTCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                    <  2:230220/128‑1 (MQ=255)

                                                                                           aaagcaaaAACCTCAATATTAAATATAGAGTTAAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGGATTATTTGGTGTAATTTTGTTCTGAGTTGGTCTTAAATTTGtttttttttt                                      <  2:809831/128‑3 (MQ=255)

                                                                                            aagaaaaAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTtata                                 <  1:3061031/128‑1 (MQ=255)

                                                                                              taaaaaaaCTACATATAAACTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                   <  2:2843756/126‑1 (MQ=255)

                                                                                                 aaaaCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCAAGCGATCATAATAAAATGTTGAAATTTAGATCTGAGTTTTTCTTAAATTTGTATTTTTTATTTATAg                                >  1:1109921/1‑128 (MQ=255)

                                                                                                    acaaccATATTACCTAAAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  2:567214/124‑1 (MQ=255)

                                                                                                    aCCTCTATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTtata                                 <  1:3484772/128‑1 (MQ=255)

                                                                                                    aCCTACATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATGTGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGttt                             <  1:2622342/128‑1 (MQ=255)

                                                                                                     ccTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATAGTGAAATATAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATAGTTta                            >  1:335931/1‑128 (MQ=255)

                                                                                                     ccTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTAAGATCTTAGTTGTTCTTAAATTTTTATTTTATATTTATAGtatata                          >  1:581632/1‑128 (MQ=255)

                                                                                                     ccTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTGTGTCTTATATTTGTAGTTTTTATTTATATTTtata                          >  2:3297010/1‑128 (MQ=255)

                                                                                                      cTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTGAAATTTGTAGATTTTATATATTGTTTATaaat                       >  2:1533607/1‑127 (MQ=255)

                                                                                                       tCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGAGCAGCGTAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                          <  1:3431850/128‑1 (MQ=255)

                                                                                                         cATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATTCAAGCTATCAGCATAAAATTGTGAAATTTATATCTGAGTTTGTCTTATATTTGTAGTTTTTATATATAGTTtata                          >  1:743076/1‑128 (MQ=255)

                                                                                                         cATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaaa                        <  1:1876886/128‑1 (MQ=255)

                                                                                                         cATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATATAGATCTGAGTTGATCTAAAATTTTTAGTTTTTATTTATAGTTTATaaa                        >  1:2273149/1‑128 (MQ=255)

                                                                                                         cATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATACAAGCTAACAACATAAAATTCATATAATTATATCAGATTTTGTAATAAATGTTTATTTTATATATATATTATATaaa                        >  2:430552/1‑128 (MQ=255)

                                                                                                          atatTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                    >  1:1651592/1‑115 (MQ=255)

                                                                                                          atatTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                       >  2:874945/1‑128 (MQ=255)

                                                                                                             ttACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGCTCAGAATAAAATGGTGAAATATAGATCTGAGTTTGTCTAAAATTTGTAGTTTTTATTTATAGTTTATATAGTta                    >  2:3336369/1‑128 (MQ=255)

                                                                                                                    taGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                               <  2:699700/92‑1 (MQ=255)

                                                                                                                     agagTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa            <  1:1831613/128‑1 (MQ=255)

                                                                                                                         ttAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt        <  1:3213296/128‑1 (MQ=255)

                                                                                                                          tAAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttt       <  1:832773/128‑1 (MQ=255)

                                                                                                                          tAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTATAttt       >  2:1444226/1‑128 (MQ=255)

                                                                                                                            tt‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCTATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttttt     <  1:1510312/127‑1 (MQ=255)

                                                                                                                             t‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa    <  1:2876560/128‑1 (MQ=255)

                                                                                                                                 tgatatatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTATAtttt      >  2:1382552/5‑128 (MQ=255)

                                                                                                                                   atatatatatatatatatatatatatataaGAAAGCGATCAAAAAAAAATTGTTATATTTAGATCTGAGTTTGTATAAAATTTTTATTTTTTATTTATATTTTATAAATTAAATAatatatatatata    >  2:2474709/3‑123 (MQ=255)

                                                                                                                                     atatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAat  <  2:3662493/128‑1 (MQ=255)

                                                                                                                                     atatatatatatatatatatatatatatGCAAGCGATCAGAATAAAATGGTGAAATATATATCTGAGTTGGTCTTATATTTTTAGTTTTTATTTATAGTTTATAAAGTTAAAAATTTATATTTTTAat  >  2:2125407/1‑128 (MQ=255)

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.