BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 437880	593 (0.430)	405 (0.230) +ATAT	87/188	25.7	34.8%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	437881 =	802 (0.450)	405 (0.230) +ATAT	87/188	25.7	34.8%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1212 total aligned reads displayed.

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTA  >  CP016816/437753‑438006

tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑g                                                                                                                                    >  1:744548/1‑128 (MQ=255)

 gAAACTTATTTTTGTATTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAAGAAAAGAAAAAACATACATATTACCTATATAGATAAT‑‑G‑‑‑‑a                                                                                                                               >  2:1574249/1‑128 (MQ=255)

  aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATTAAGCAAAGCAAAAACCTCCAATTTACCTATAGAGTTAAT‑‑G‑‑‑‑at                                                                                                                              >  2:932513/1‑128 (MQ=255)

     cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atata                                                                                                                           >  2:2303509/1‑128 (MQ=255)

       tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatata                                                                                                                         >  2:2358273/1‑128 (MQ=255)

        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatat                                                                                                                        >  2:165566/1‑128 (MQ=255)

        aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatat                                                                                                                        >  1:2010086/1‑128 (MQ=255)

         tttttGTATTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATA‑TTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatat                                                                                                                      <  2:2578469/128‑1 (MQ=255)

         tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAATTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatt                                                                                                                       >  1:241831/1‑127 (MQ=255)

         tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑T‑‑‑‑ataaataaa                                                                                                                       >  2:2494847/1‑126 (MQ=255)

            ttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatat                                                                                                                    <  1:909507/128‑1 (MQ=255)

                atttttaatattCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGCAAAAACATCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatat                                                                                                                <  2:1750870/118‑1 (MQ=255)

                 ttttttaGTTTAATTTTTTATAAATATTAGAAATAAAAATTGTATTTTTATAATAAATATTTTATGAAATGATTCAAAGCAAAAAACTCCATATTACCTATAGAGTTATT‑‑G‑‑‑‑atatatatatatatata                                                                                                               <  2:1087010/122‑1 (MQ=255)

                   tGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatata                                                                                                             >  2:1453183/1‑128 (MQ=255)

                    gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAA‑‑G‑‑‑‑atatatatatatatatatat                                                                                                            <  1:952940/128‑1 (MQ=255)

                     tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatata                                                                                                           <  1:32810/128‑1 (MQ=255)

                     tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatata                                                                                                           >  1:1242432/1‑128 (MQ=255)

                      taGTTTAATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATTAATCAAAGAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatat                                                                                                          <  1:443716/127‑1 (MQ=255)

                      aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatat                                                                                                          >  1:176377/1‑128 (MQ=255)

                      aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGAAAAGAAAAAACCTCAATATTACATATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatataaat                                                                                                          >  1:213385/1‑128 (MQ=255)

                        gTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatat                                                                                                        >  2:3087424/1‑128 (MQ=255)

                          ttaaTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAAGAAAAGCAAAAACCTCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatat                                                                                                      <  2:3678090/125‑1 (MQ=255)

                          ttCATTTTTAATAAATATTAGAAATATAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatat                                                                                                      <  2:1385441/128‑1 (MQ=255)

                          ttCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatat                                                                                                      <  1:3438375/128‑1 (MQ=255)

                           taaTTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatata                                                                                                     <  2:2396205/126‑1 (MQ=255)

                           tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCATAATCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatataaatatttatata                                                                                                     >  2:2752617/1‑128 (MQ=255)

                            cATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatatat                                                                                                    >  1:2760900/1‑128 (MQ=255)

                             aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATg                                                                                                   >  2:2874864/1‑128 (MQ=255)

                                tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatatataaaa                                                                                                >  2:2656201/1‑124 (MQ=255)

                                  ttataaataTTATAAATAAAAATTTTTTTTTTAAAATAAATATTTTTTTATATGAAGCAAAGCAAAAAACTCCATATTAATTATAGAGTTAAT‑‑T‑‑‑‑atatatatatatatatatatatatatatatatat                                                                                              <  2:2792168/126‑7 (MQ=255)

                                  taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatatgaaagcga                                                                                              >  1:523328/1‑120 (MQ=255)

                                   aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCg                                                                                             >  1:3156188/1‑128 (MQ=255)

                                     taaataTTATAAATAAAAATTTTATTTTTATAAAAAATATATTAGGAAATTAATCAAAGCAAAAAAATCAATATTAAATATAGAGTTAAT‑‑T‑‑‑‑atatatatatatatatatatatatatatatgcaagcg                                                                                           <  2:3879351/128‑10 (MQ=255)

                                      aaataTTAGAAATAAAAATAGTATTTATAAAATAAATATTTTAGTAAATTAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGa                                                                                            <  1:2802311/128‑1 (MQ=255)

                                       aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatttatatattaaagatatca                                                                                         >  2:3338286/1‑117 (MQ=255)

                                       aataTTAAAAATAAAAATTGTATTTTAAAAATAAATATTTTAGCAAATTAATCAAATCAAAAACCTCAATATTACCTATAGAATTAAT‑‑A‑‑‑‑ATAAATATATATATATATATATATATATGCAAGAGATCa                                                                                         >  1:1824626/1‑128 (MQ=255)

                                         tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATCTGc                                                                                       >  2:3445200/1‑128 (MQ=255)

                                         tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATA‑‑CAAGCTATCAGAAt                                                                                     >  1:151334/1‑128 (MQ=255)

                                          atTAGAAATAAAAATTTTATTATTAAAATAAAAATTTTATTAAATGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAg                                                                                        <  1:1054055/128‑1 (MQ=255)

                                           atAGATATAATAATTTTTTTTTTTATAAATATATTTTTTGAAATGTTTCAAATCAAAAAAATCAATATTAAATATAGAGATATTTAT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGc                                                                                       <  2:1904147/127‑1 (MQ=255)

                                            tAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGTATATGAATAAAATCAAAAACCTCCATATTACCTATAGAGTTAAA‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATa                                                                                    <  1:596466/128‑1 (MQ=255)

                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGAGATAAGCa                                                                                      >  2:3223187/1‑128 (MQ=255)

                                            tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTAAAGATATCAGCATa                                                                                    >  1:2629907/1‑128 (MQ=255)

                                             aGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaaaa                                                                                 >  2:818901/1‑128 (MQ=255)

                                               aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATAATCTAGCGATCAACATataa                                                                                 >  2:1214881/1‑128 (MQ=255)

                                               aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑T‑CAAGCGATCAGCATAAAAtc                                                                               >  1:3212165/1‑127 (MQ=255)

                                                 aTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTACATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGt                                                                             <  1:3510095/128‑1 (MQ=255)

                                                  tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATCAAAAACCTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATgg                                                                              <  1:2896980/128‑1 (MQ=255)

                                                   aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGt                                                                             >  1:2997098/1‑128 (MQ=255)

                                                    aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCTAGCGATCAGCATAAAATgaag                                                                            >  1:2534965/1‑125 (MQ=255)

                                                    aaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGAAAGCGATCAGAATAAAATTGTGaa                                                                          >  2:3168542/1‑128 (MQ=255)

                                                      aaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATGTATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                        <  1:3705379/128‑1 (MQ=255)

                                                        aagctattttAAATAATATATTTTATTAAATTTATAAAATCAAAAACATACATATAAACAATAGAGTTAATTAT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGaa                                                                          <  2:2004500/122‑1 (MQ=255)

                                                         tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCAAGAGATCAGCATAAAATGTTGAAAtt                                                                       >  2:1260342/1‑128 (MQ=255)

                                                          gtttttatAAAATAAATATTATATAAAATTTATCAAATAAATAAACTCTATATTAACTATAGAGTTATT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATATAATGGTGAAAt                                                                        <  1:1315021/125‑1 (MQ=255)

                                                           tATTTTTTAAATAAATATTTTAGGAAATGAATCACAGCAAAAACCTCCATATTACATATATAGATAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTa                                                                     <  2:223155/128‑1 (MQ=255)

                                                           tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCTAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCAAATAATTGTGACAtt                                                                       >  1:1199142/1‑128 (MQ=255)

                                                            aTTTTTAATATAAATATTTTAGTAAATTACGCAAAGCAAAAACCACCATATTAAATATAGAGATAATTAT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAttt                                                                      <  2:569479/128‑1 (MQ=255)

                                                            aTTTTTAAAATAAATATTTTAGGATATTAATCAAATCAAAAACCTCCATATTACCTATAGAGTTATT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAg                                                                    <  2:3540540/128‑1 (MQ=255)

                                                               tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCTATCAGCATAAAATGGTGAATTTTATATATg                                                               >  2:1152119/1‑128 (MQ=255)

                                                                attatataaataaATTAGTTAATTAAGTAAAGAAAAACACTCCATATATTTTATAGATATACT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCt                                                                <  2:3726771/123‑1 (MQ=255)

                                                                  aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatatgcaatcgat                                                                                             >  1:2352802/1‑88 (MQ=255)

                                                                   aaataaatATTTTATGAAATGAAGAAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                             <  1:3108491/128‑1 (MQ=255)

                                                                         atatatTATGAAATTAAGAAAATAAAAAACCTCCATATTAACTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                           <  1:2272163/128‑1 (MQ=255)

                                                                         atatTTTAGGAAATGAAGAAAATAAAAAAACTCCATATTACATATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                           <  2:445881/128‑1 (MQ=255)

                                                                          aatTTTATGAAATGAACCTCATCTAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCt                                                      <  1:2196543/127‑1 (MQ=255)

                                                                            ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                    <  1:137580/128‑1 (MQ=255)

                                                                              ttattaaaTGAAGCAAATCAAAAACATCCATATTAACTATAGAGATAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                  <  1:101/123‑1 (MQ=255)

                                                                               tatgAAAAGAAGCAAATCAAAAACCTCCATATTACCTATAGAGATAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                   <  1:2691224/125‑1 (MQ=255)

                                                                                aGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGTGTTGGTCTTaaa                                                  >  1:2084408/1‑128 (MQ=255)

                                                                                 ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAATTGGAGAAATTTAGATCTGAGTTGTTCATaa                                                   >  2:1534704/1‑128 (MQ=255)

                                                                                  gAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAtt                                                <  2:2963406/128‑1 (MQ=255)

                                                                                   taattaataaaagaaaaAAACTCACTATTAACAATAGAGATAAA‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAttt                                               <  1:3660419/119‑1 (MQ=255)

                                                                                    aaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTa                                            <  2:1814006/128‑1 (MQ=255)

                                                                                      tgaataaaatcaaaAACCTCTATATTACCTATAGAGTTAAA‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGt                                          <  1:687632/122‑1 (MQ=255)

                                                                                      tGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGt                                          >  1:3776007/1‑128 (MQ=255)

                                                                                       gAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGTAGAAATTTATATATGAGTTGTTATTAAATTTTTAg                                           >  1:3361319/1‑128 (MQ=255)

                                                                                          gccaagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttttt                                      <  1:3598995/125‑1 (MQ=255)

                                                                                           caaagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                     <  1:1876151/128‑1 (MQ=255)

                                                                                             aagaaaaAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTtata                               <  1:3061031/128‑1 (MQ=255)

                                                                                              agcaaaCAACTCCATATTTCCTCTAGAGTTTTT‑‑G‑‑‑‑AGATATATATATATCAAAATATATATATGCAAGCGATCAGCATAAAATGGTGAACTTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                  <  2:707175/128‑1 (MQ=255)

                                                                                               gcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGAAATCTATCATCATAAAATGGTGAAATTTAGATCTGAGTTGGTGTTATTTTTTTAGTTtttattta                                 >  2:519794/1‑128 (MQ=255)

                                                                                                caaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCAAGCTATCAGCAAAATATGGTGAAATATAGATCTGAGTTGCTCTAAAATTTGTAGTTTttatttat                                >  1:1686390/1‑128 (MQ=255)

                                                                                                ataaaaTCTCTATATTAAATATAGAGTTATT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAg                              <  1:1655744/126‑1 (MQ=255)

                                                                                                  aaaaCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCAAGCGATCATAATAAAATGTTGAAATTTAGATCTGAGTTTTTCTTAAATTTGTATTTTTTATTTATAg                              >  1:1109921/1‑128 (MQ=255)

                                                                                                      ccTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTGTGTCTTATATTTGTAGTTTTTATTTATATTTtata                        >  2:3297010/1‑128 (MQ=255)

                                                                                                       cTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTTATATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATaa                       >  1:1461004/1‑128 (MQ=255)

                                                                                                         ccATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGGTATTATATTTGTATTTATTATTTATATTTtatat                       >  2:2153010/1‑127 (MQ=255)

                                                                                                           atatTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                     >  2:874945/1‑128 (MQ=255)

                                                                                                           atatTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATATAATGGTGAAATTTAGATCTGATTTTGTCTTATATTTGTATTTTTTATATATAGTATATAAAGtt                   >  1:999666/1‑128 (MQ=255)

                                                                                                              ttACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta                  >  2:1319703/1‑128 (MQ=255)

                                                                                                               tACCTATAGAGTCAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                 <  2:2070886/128‑1 (MQ=255)

                                                                                                                 tatataGAGTTATT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaata               <  2:3799384/126‑1 (MQ=255)

                                                                                                                  atataGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaataa              <  1:1573410/127‑1 (MQ=255)

                                                                                                                       gagTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAg         <  1:3850797/128‑1 (MQ=255)

                                                                                                                          ttAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGCTCCGCATAAAATGGAGAAATATAGATCTGAGTTGCTCATAAATTTTTAGTTTTTTTTTATAGTATATAAATTTAATTATTTAGAtt      >  2:658437/1‑128 (MQ=255)

                                                                                                                          ttAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATAAGAAAAAAATGTTGAAAATTATATCTGATTTTGTCTTATATTTGTAGTTTTTATTTATAGATTATAAAGATAATAATTTAGAtt      >  1:627445/1‑128 (MQ=255)

                                                                                                                           tAAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttt     <  1:832773/128‑1 (MQ=255)

                                                                                                                           tAAT‑‑G‑‑‑‑ATATATATATATATATATTTATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttt     <  1:1929444/128‑1 (MQ=255)

                                                                                                                            aaT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtttt    >  2:3617950/1‑128 (MQ=255)

TGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTA  >  CP016816/437753‑438006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.