Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_vch_tpiA	257,908	Δ776 bp		[crl]	[crl]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_vch_tpiA	257908	258683	776	38 [0]	[0] 38	[crl]	[crl]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 257907	0 (0.000)	38 (1.250)	32/266	0.1	100%	noncoding (257907/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	258684 =	0 (0.000)					noncoding (258684/4641682 nt)	repeat_region	repeat region

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTT  >  NC_000913_3_vch_tpiA/258545‑258823                                                                                                                                            |                                                                                                                                            taaaaatttgctaaattttgccaatttggtaaaaccgttgtattacatcaggagatatcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatgtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa                                                                                                                                    <  2:369980‑M2/10‑1 (MQ=255)  aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAt                                                                                                                                   <  1:353917‑M2/11‑1 (MQ=255)            taaattttgccaatttggtaaaacagttgcatcacaacaagagataacaataacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt                                                                                                                         >  1:96716‑M2/129‑149 (MQ=255)                   tgctaagttggtaaaacattggcatcacaccaggagatagcaatgacgttaccgagtgtacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCTATTCTTTTTCGa                                                                                                                  <  2:469525‑M2/28‑1 (MQ=255)                   tgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                                                                                                                  <  2:417040‑M2/28‑1 (MQ=255)                       aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGAAAAGATAATCGATTCTTTTTCGATTGt                                                                                                              >  1:192828‑M2/118‑149 (MQ=255)                       aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattaatcaaaaaatttaccgcactaggcccgaatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt                                                                                                              >  1:228495‑M2/118‑149 (MQ=255)                        aggtgggaaaacagttgcatcacaaccggagacagtaatgacgttaccgagtgtacactcgaagagcagatttatcaaataatttaccgcacgaggcccgtatagtaatgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTc                                                                                                             >  2:243464‑M2/117‑149 (MQ=255)                                 aacagtggtatcagaacaggacatagcaatgaagttagctaggggaaacccgaagatcagattgatcaaaaaatttaccgcactaggcccgtatattcgttaaggtaAGTGCAAATATAATCGATTCTTTTTCGATTGTCTGGCTGTAt                                                                                                    <  2:217401‑M2/42‑1 (MQ=255)                                   ccgctgcatcaccacaggcctgtgcaatgacgttaccgagtggatacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc                                                                                                  <  1:233396‑M2/44‑1 (MQ=255)                                    agttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg                                                                                                 >  2:579478‑M2/105‑149 (MQ=255)                                         catcacaacaggagatagcaatgacgttaccgagtggacacccgaaaagcagatagatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCGAc                                                                                            >  1:73992‑M2/100‑149 (MQ=255)                                           tcacaacaggagatagcaatgacgttaccgagtggacacacgaagagcaaattcaacaaaaaattaaccgcaataggcccgtatattcgtaaagaaaAGAGCAAAGATAATCGATTCTTTTTCGATTGTATGGCTGTATGCGTCAACGt                                                                                          >  1:101742‑M2/98‑149 (MQ=255)                                           tcacaacaggagatagcaatgacgttaccgaatggacacccgaagagaagaaataagaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGt                                                                                          >  1:104285‑M2/98‑149 (MQ=255)                                               accaggagaaagcaatgacggcaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaaa                                                                                      <  2:1061‑M2/56‑1 (MQ=255)                                                                 cgttaacgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTTTTTTTCGATTGTTTGGCTGTATGTGTAAAAGTGAAACCGGCACCGGAAGTGCGt                                                                    <  1:51663‑M2/74‑1 (MQ=255)                                                                    taccgagtggacacacgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGaa                                                                 <  2:286390‑M2/77‑1 (MQ=255)                                                                         agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTg                                                            <  2:277338‑M2/82‑1 (MQ=255)                                                                          gtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgg                                                           <  1:409644‑M2/83‑1 (MQ=255)                                                                                  ccgaagagcagattgatcaaaaaatttaccacactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCAATTGTCTGGCTGTATGCGTCAACGTGAAAACGGCACCGGAAGCGCGTGAATCATGGGGCgggtg                                                   >  2:580488‑M2/59‑149 (MQ=255)                                                                                   cgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATAGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACAGACACCGGAAGTGAGTGAATTCTGGGGCtggtgg                                                  >  2:557485‑M2/58‑149 (MQ=255)                                                                                      agagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatg                                               <  1:163686‑M2/95‑1 (MQ=255)                                                                                          cagattgaacaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGc                                           <  2:228495‑M2/99‑1 (MQ=255)                                                                                            gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                                                                                                                 <  1:333055‑M2/29‑1 (MQ=255)                                                                                            gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                                                                                                                 >  2:333055‑M2/49‑77 (MQ=255)                                                                                             attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTgg                                        >  1:4981‑M2/48‑149 (MQ=255)                                                                                             attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCAATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTgg                                        >  1:448847‑M2/48‑149 (MQ=255)                                                                                                 atcaaaaaatttacctcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTTGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGTACCGGAAGTGCGTGAATATTTGTGCTGGTGGATGGAGCTGGAAgc                                    <  1:243464‑M2/106‑1 (MQ=255)                                                                                                  tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgcg                                   >  2:503752‑M2/43‑149 (MQ=255)                                                                                                       aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGa                              >  1:251671‑M2/38‑149 (MQ=255)                                                                                                               tgcattaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt                      <  1:495237‑M2/120‑1 (MQ=255)                                                                                                                   ctacgcccgtatatacttgaaggtaAGTTCAAAGATAATCGATTCTTTTTCGATTGTCGGGCTGCATGCCTCAACGCGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc                  <  2:304733‑M2/124‑1 (MQ=255)                                                                                                                      ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTa               <  2:251671‑M2/127‑1 (MQ=255)                                                                                                                        cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACa             <  1:503752‑M2/129‑1 (MQ=255)                                                                                                                        cccgtatattcgtgaaggtaAGGGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCCTTTTTCTTACa             <  2:4981‑M2/129‑1 (MQ=255)                                                                                                                          cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc                                                                      >  2:432490‑M2/19‑90 (MQ=255)                                                                                                                          cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc                                                                      <  1:432490‑M2/72‑1 (MQ=255)                                                                                                                                   gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGCGATGGTCCGGCAGGAATCCCGTTTTACCTACAGTTACCAGttt  <  1:577307‑M2/140‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTT  >  NC_000913_3_vch_tpiA/258545‑258823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑