Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_vch_tpiA	257,908	Δ776 bp		[crl]	[crl]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_vch_tpiA	257908	258683	776	38 [0]	[0] 38	[crl]	[crl]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 257907	0 (0.000)	38 (1.250)	32/266	0.1	100%	noncoding (257907/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	258684 =	0 (0.000)					noncoding (258684/4641682 nt)	repeat_region	repeat region

TAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913_3_vch_tpiA/257769‑258047                                                                                                                                           |                                                                                                                                             tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACCGTTGTATTACATCAGGAGATATCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATGTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga                                                                                                                                    <  2:369980‑M1/149‑11 (MQ=255)  aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat                                                                                                                                   <  1:353917‑M1/149‑12 (MQ=255)            tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAAGAGATAACAATAACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct                                                                                                                         >  1:96716‑M1/1‑128 (MQ=255)                   tGCTAAGTTGGTAAAACATTGGCATCACACCAGGAGATAGCAATGACGTTACCGAGTGTACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatctattctttttcga                                                                                                                  <  2:469525‑M1/149‑29 (MQ=255)                   tGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                  <  2:417040‑M1/149‑29 (MQ=255)                       aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgaaaagataatcgattctttttcgattgt                                                                                                              >  1:192828‑M1/1‑117 (MQ=255)                       aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTAATCAAAAAATTTACCGCACTAGGCCCGAATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt                                                                                                              >  1:228495‑M1/1‑117 (MQ=255)                        aggtgggAAAACAGTTGCATCACAACCGGAGACAGTAATGACGTTACCGAGTGTACACTCGAAGAGCAGATTTATCAAATAATTTACCGCACGAGGCCCGTATAGTAATGAAGGTAagtgcaaagataatcgattctttttcgcttgtc                                                                                                             >  2:243464‑M1/4‑116 (MQ=255)                                 aaCAGTGGTATCAGAACAGGACATAGCAATGAAGTTAGCTAGGGGAAACCCGAAGATCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTTAAGGTAagtgcaaatataatcgattctttttcgattgtctggctgtat                                                                                                    <  2:217401‑M1/149‑43 (MQ=255)                                   ccgctgcatCACCACAGGCCTGTGCAATGACGTTACCGAGTGGATACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                  <  1:233396‑M1/145‑45 (MQ=255)                                    aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                 >  2:579478‑M1/1‑104 (MQ=255)                                         cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAAAGCAGATAGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcgac                                                                                            >  1:73992‑M1/1‑99 (MQ=255)                                           tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACACGAAGAGCAAATTCAACAAAAAATTAACCGCAATAGGCCCGTATATTCGTAAAGAAAagagcaaagataatcgattctttttcgattgtatggctgtatgcgtcaacgt                                                                                          >  1:101742‑M1/1‑97 (MQ=255)                                           tCACAACAGGAGATAGCAATGACGTTACCGAATGGACACCCGAAGAGAAGAAATAAGAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt                                                                                          >  1:104285‑M1/1‑97 (MQ=255)                                               accaggAGAAAGCAATGACGGCACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa                                                                                      <  2:1061‑M1/147‑57 (MQ=255)                                                                 cGTTAACGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattttttttcgattgtttggctgtatgtgtaaaagtgaaaccggcaccggaagtgcgt                                                                    <  1:51663‑M1/149‑75 (MQ=255)                                                                    tACCGAGTGGACACACGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaa                                                                 <  2:286390‑M1/149‑78 (MQ=255)                                                                         aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                            <  2:277338‑M1/149‑83 (MQ=255)                                                                          gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg                                                           <  1:409644‑M1/149‑84 (MQ=255)                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCACACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcaattgtctggctgtatgcgtcaacgtgaaaacggcaccggaagcgcgtgaatcatggggcgggtg                                                   >  2:580488‑M1/1‑58 (MQ=255)                                                                                   cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatagattctttttcgattgtctggctgtatgcgtcaacgtgaaacagacaccggaagtgagtgaattctggggctggtgg                                                  >  2:557485‑M1/1‑57 (MQ=255)                                                                                      agagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                               <  1:163686‑M1/149‑96 (MQ=255)                                                                                          cAGATTGAACAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagc                                           <  2:228495‑M1/149‑100 (MQ=255)                                                                                            gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat                                                                                                                 <  1:333055‑M1/77‑30 (MQ=255)                                                                                            gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat                                                                                                                 >  2:333055‑M1/1‑48 (MQ=255)                                                                                             aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                        >  1:4981‑M1/1‑47 (MQ=255)                                                                                             aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcaattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg                                        >  1:448847‑M1/1‑47 (MQ=255)                                                                                                 aTCAAAAAATTTACCTCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttttgattgtctggctgtatgcgtcaacgtgaaaccggtaccggaagtgcgtgaatatttgtgctggtggatggagctggaagc                                    <  1:243464‑M1/149‑107 (MQ=255)                                                                                                  tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcg                                   >  2:503752‑M1/1‑42 (MQ=255)                                                                                                       aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagga                              >  1:251671‑M1/1‑37 (MQ=255)                                                                                                               tgcATTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                      <  1:495237‑M1/148‑121 (MQ=255)                                                                                                                   cTACGCCCGTATATACTTGAAGGTAagttcaaagataatcgattctttttcgattgtcgggctgcatgcctcaacgcgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                  <  2:304733‑M1/149‑125 (MQ=255)                                                                                                                      ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta               <  2:251671‑M1/149‑128 (MQ=255)                                                                                                                        cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca             <  1:503752‑M1/149‑130 (MQ=255)                                                                                                                        cccGTATATTCGTGAAGGTAagggcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccctttttcttaca             <  2:4981‑M1/149‑130 (MQ=255)                                                                                                                          cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                      >  2:432490‑M1/1‑18 (MQ=255)                                                                                                                          cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                      <  1:432490‑M1/90‑73 (MQ=255)                                                                                                                                   gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggcgatggtccggcaggaatcccgttttacctacagttaccagttt  <  1:577307‑M1/149‑141 (MQ=255)                                                                                                                                           |                                                                                                                                             TAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913_3_vch_tpiA/257769‑258047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑