| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 2161648 = | 15 (0.600) | 5 (0.200) | 5/282 | 2.6 | 23.4% | noncoding (2161648/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2161675 = | 18 (0.730) | noncoding (2161675/4641682 nt) | repeat_region | repeat region | |||||
TCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGCGGCGCGATGATGGTGCCGGTCGGCA > NC_000913_3_vch_tpiA/2161546‑2161821 | tCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGAGGACAAAGTCGGCGTGCGCAATAtt > 2:341690/1‑149 (MQ=255)tCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTAACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATAtt > 1:68998/1‑149 (MQ=255) cagcaacagttcgttcagcgtgccggaaagcgcgcaaaacagtgaaccgagagtaaacagcacgatggcggtaaagaaaatattgcgcacgccgacttTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCg < 2:337692‑M1/33‑1 (MQ=255) cagcaacagttcgttcagcgtgccggaaagcgcgcaaaacagtgaaccgagagtaaacagcacgatggcggtaaagaaaatattgcgcacgccgacttTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCg > 1:337692‑M1/99‑131 (MQ=255) cGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCg > 2:88612/1‑149 (MQ=255) gtCCCTCGGTGGCGCAAAGCCGCGGGGAAAGTCCGTTGCATATTGCA‑ATGGTCATTGTCTTTTATGTGCTGACCGGGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAGTATTTTCTTTACCGCTATc < 2:206206/148‑1 (MQ=255) ttctttCGTGGAAAGTCCGTTGTGTA‑GGCTCCTGTTCATTGTCTCTTATGTGCTGACCTTGGCGGTGATGCTGCCCGCCTGCGGCTGGCTGGCCGACAATGTCGGCGTGCGCAATATTTTCTTTACCGTTATCGTGCTGTTTACTCTCg < 2:193810/144‑1 (MQ=255) cGTTGCATA‑TGCACATGGTCATTGTGTGTTAAAGAGAGAGCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTgctag > 1:215351/1‑146 (MQ=255) gcccgtGGTCATTGGTCCTTATGTGCGGACCGTGGGGTTGATGCTGCCCGCCAGCGGCTTGCTGGCGGACAAAGGCGGCGTGCGCAATATTTTCTTTGCCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCa < 2:215351/144‑1 (MQ=255) gTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACt > 1:189103/1‑149 (MQ=255) gTCTCTTATGTGCTGACCGTGGCCGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACt < 1:158026/149‑1 (MQ=255) tgaTGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGc > 1:65965/3‑149 (MQ=255) aTGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTg < 2:189103/149‑1 (MQ=255) cGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGt > 2:364240/1‑149 (MQ=255) ggggATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCCCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAgg < 1:108139/146‑1 (MQ=255) cgactttgtccgccagccagccgctggcgggcaAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTg > 1:337692‑M2/34‑131 (MQ=255) cgactttgtccgccagccagccgctggcgggcaAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTg < 2:337692‑M2/98‑1 (MQ=255) tgctgcCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCACCATCGTGCTGTTTACTCTCGCTTCACTGTTTTGCGAGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGTGCGtt > 2:119281/1‑149 (MQ=255) TGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGc < 1:301578‑M1/149‑1 (MQ=255) gtccaccagccagccgctggcgggcaAAGTCGGCGTCCGCAATAATTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCCGCACGCTGAACGAACTGTTGCTGCACCGCGCGTTACAGGGCCTTgtcg > 2:8552‑M2/27‑149 (MQ=255) cccGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTCCTCTTGGTTCACTGGTTTGCGCGCTTTCAGGCAACCTGAACGCAGTATTGCTGGCAAGCGCGGTGCAGGGCGTTggcgg > 1:162896/1‑149 (MQ=255) cccGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCCCGTTCCAGGGCGTTggcgc > 2:196461/1‑148 (MQ=255) ccagccagccgctggcgggcaAAGTCGGCGTGCGCAATAtt < 2:171705‑M2/20‑1 (MQ=255) ccagccagccgctggcgggcaAAGTCGGCGTGCGCAATAtt > 1:171705‑M2/22‑41 (MQ=255) aGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGTAAGATTTTCTTTACCGCCATCGGGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGCGGCGCgat < 1:88612/149‑1 (MQ=255) tggcGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGCGGCGCGATGATGGTGCCg > 2:67029/1‑149 (MQ=255) caAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGCGGCGCGATGATGGTGCCGGTCGGCa < 1:341690‑M2/147‑1 (MQ=255) | TCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGCGGCGCGATGATGGTGCCGGTCGGCA > NC_000913_3_vch_tpiA/2161546‑2161821 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |