New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2161648 =	15 (0.600)	5 (0.200)	5/282	2.6	23.4%	noncoding (2161648/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2161675 =	18 (0.730)					noncoding (2161675/4641682 nt)	repeat_region	repeat region

GATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGACACCACCATCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGC  >  NC_000913_3_vch_tpiA/2161502‑2161796                                                                                                                                                    |                                                                                                                                                     tgccgaccggcaccatcatcgcgccgccaacgccctgtaacgcgcgtgccagcaacagttcgttcagcgtgccggaaagcgcgcaaaacagtgaaccgagagtaaacagcacgatggcggtaaagaaaatattgcgcacgccgacttTg                                                                                                                                                     <  1:341690‑M1/2‑1 (MQ=255)                    tttATGCAGTCGCTGGACACCACCATCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCtggctggc                                                                                                                                 >  1:149991/1‑149 (MQ=255)                         cgacaaggccctgtaacgcgcggtgcagcaacagttcgttcagcgtgcgggaaagcgcgcaaaacagtgaaccgagagtaaacagcacgatggcggtaaagaaattattgcggacgccgacttTGCCCGCCAGCGGCTGGCTGGTGGAc                                                                                                                             >  2:8552‑M1/124‑149 (MQ=255)                                             tCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGAGGACAAAGTCGGCGTGCGCAATAtt                                                                                                        >  2:341690/1‑149 (MQ=255)                                             tCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTAACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATAtt                                                                                                        >  1:68998/1‑149 (MQ=255)                                                  cagcaacagttcgttcagcgtgccggaaagcgcgcaaaacagtgaaccgagagtaaacagcacgatggcggtaaagaaaatattgcgcacgccgacttTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCg                                                                                                                      <  2:337692‑M1/33‑1 (MQ=255)                                                  cagcaacagttcgttcagcgtgccggaaagcgcgcaaaacagtgaaccgagagtaaacagcacgatggcggtaaagaaaatattgcgcacgccgacttTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCg                                                                                                                      >  1:337692‑M1/99‑131 (MQ=255)                                                       cGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCg                                                                                              >  2:88612/1‑149 (MQ=255)                                                            gtCCCTCGGTGGCGCAAAGCCGCGGGGAAAGTCCGTTGCATATTGCA‑ATGGTCATTGTCTTTTATGTGCTGACCGGGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAGTATTTTCTTTACCGCTATc                                                                                         <  2:206206/148‑1 (MQ=255)                                                                            ttctttCGTGGAAAGTCCGTTGTGTA‑GGCTCCTGTTCATTGTCTCTTATGTGCTGACCTTGGCGGTGATGCTGCCCGCCTGCGGCTGGCTGGCCGACAATGTCGGCGTGCGCAATATTTTCTTTACCGTTATCGTGCTGTTTACTCTCg                                                                         <  2:193810/144‑1 (MQ=255)                                                                                             cGTTGCATA‑TGCACATGGTCATTGTGTGTTAAAGAGAGAGCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTgctag                                                        >  1:215351/1‑146 (MQ=255)                                                                                                        gcccgtGGTCATTGGTCCTTATGTGCGGACCGTGGGGTTGATGCTGCCCGCCAGCGGCTTGCTGGCGGACAAAGGCGGCGTGCGCAATATTTTCTTTGCCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCa                                              <  2:215351/144‑1 (MQ=255)                                                                                                                     gTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACt                                 >  1:189103/1‑149 (MQ=255)                                                                                                                     gTCTCTTATGTGCTGACCGTGGCCGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACt                                 <  1:158026/149‑1 (MQ=255)                                                                                                                          tgaTGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGc                            >  1:65965/3‑149 (MQ=255)                                                                                                                            aTGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTg                          <  2:189103/149‑1 (MQ=255)                                                                                                                                aatattgcgcacgccgacttTGCCCGCCAGCGGctggctgg                                                                                                                                  <  2:171705‑M1/21‑1 (MQ=255)                                                                                                                                aatattgcgcacgccgacttTGCCCGCCAGCGGctggctgg                                                                                                                                  >  1:171705‑M1/21‑41 (MQ=255)                                                                                                                                      cGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGt                >  2:364240/1‑149 (MQ=255)                                                                                                                                            ggggATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCCCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAgg          <  1:108139/146‑1 (MQ=255)                                                                                                                                                 tgctgcCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCACCATCGTGCTGTTTACTCTCGCTTCACTGTTTTGCGAGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGTGCGtt     >  2:119281/1‑149 (MQ=255)                                                                                                                                                    TGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGc  <  1:301578‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GATTGTGGCTTTCGGCTTCTTTATGCAGTCGCTGGACACCACCATCGTAAACACCGCCCTTCCCTCAATGGCGCAAAGCCTCGGGGAAAGTCCGTTGCATA‑TGCACATGGTCATTGTCTCTTATGTGCTGACCGTGGCGGTGATGCTGCCCGCCAGCGGCTGGCTGGCGGACAAAGTCGGCGTGCGCAATATTTTCTTTACCGCCATCGTGCTGTTTACTCTCGGTTCACTGTTTTGCGCGCTTTCCGGCACGCTGAACGAACTGTTGCTGGCACGCGCGTTACAGGGCGTTGGC  >  NC_000913_3_vch_tpiA/2161502‑2161796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.