| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 1552101 = | NA (NA) | 7 (0.310) | 7/262 | 1.8 | NA | noncoding (31/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 1552249 = | NA (NA) | noncoding (1/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTT > NC_000913_3_vch_tpiA/1552102‑1552396 | ttAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGc > 1:228002‑M1/3‑149 (MQ=255) AAACCCTTCAGATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCgg > 2:251662‑M1/1‑149 (MQ=255) aCCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt < 2:121063/149‑1 (MQ=255) aaaTCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGt < 1:336333/149‑1 (MQ=255) tGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTTATCAGTTTCAAATGGCGCTGTAAAAGGCGTAATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATcc < 2:65860/149‑1 (MQ=255) aaaatgacgccttttacagcgctatttgaaactgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCa < 1:121063‑M2/31‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCCGATGCGGCGTGAACGCCTTATCCGGAATGAACAcc > 1:263797/1‑149 (MQ=255) aGGCCTAATAAGGTTAGCGAATCAGGTAATGTTGTGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCt < 2:159153/149‑1 (MQ=18) ggacTGAGAGGCGGAGGGAATCAGGCAATGTTGTGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCtt < 2:96968/146‑1 (MQ=17) gcatGATAAGCGTAGCGCATCAGGCAATGTTGCTTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTc < 1:256406/146‑1 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTc > 1:102175/1‑149 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATCTTGTAGACAAAGTCGGCTTTTTACATGCCCGTAGCGGCCTAAAAGCATTATACGGCATGAAAACACttga > 1:168746/1‑147 (MQ=21) tGATAAGCGTAGCGCATCAGACAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAAGTAGGCTTTGTTCATGCCGGATGCGGCGTGAAAGCCTTATCCGGCATGAATACCTTTCaaa > 2:265208/1‑149 (MQ=21) ataTAAGCGGAGGGCATAAGGCAATGTTGTGTTTGTCATCATTTTCAAATGGCGCTGTAAAAGGCTTTATTTTCATATTGTAGACAACGTAGCTGTGGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCaaa < 1:304846/147‑1 (MQ=17) taTAAGTGTAGTGCATCAAGCAATGGTGTGTTGGTTATCTCATGCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAAt < 1:80976/148‑1 (MQ=14) aTAAGCGTAGCGCATCAGGCAATGTTGTGTTTGTGTTTAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATc < 1:185045/149‑1 (MQ=255) aTAAGCGTAGCGCATCAGGCAATGTTGGGTTTGTTATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATc < 1:268428/149‑1 (MQ=255) aTAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATc < 2:102175/149‑1 (MQ=255) aTAAGCGGAGCGCATCAGGCAATGTTGTGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATAGTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATc < 2:353529/149‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGACGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAg > 1:153382/1‑149 (MQ=255) gcgcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCCTTTTCTTATTGTATTCAACGTAGGCTTTGTTCATGCAGGATGCGGCGTGGACGACTTATTCGCCTTGAAAACCCTTCACATCCgattgatt > 2:324677/1‑149 (MQ=18) aactgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTAt > 1:203583‑M2/90‑114 (MQ=255) aactgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTAt < 2:203583‑M2/25‑1 (MQ=255) aGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGa > 2:237027/1‑149 (MQ=255) tcAATGTTGCTTTTATCATAAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTTTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAc < 1:193955/148‑1 (MQ=14) aaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTATCCGGc > 1:380036‑M2/80‑109 (MQ=255) aaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTATCCGGc < 2:380036‑M2/30‑1 (MQ=255) tGTCATCAGTTGCCAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAAGCTTTGTTGATGCCGGATGAGGCGGGACCGCCTTATCCGGCATAAACACCCTCAAAATCAAATAGCTTGATGTGAACCGGTAGGCGTGAt > 2:249439/1‑149 (MQ=11) gTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGCTGCGGCGTGAACGCCTTATCCGGCATGAAAAACCTTCAAATCCAATAGATTGCAGTGAAGGTGTAGGCATGCTAAGCGtta > 2:236969/1‑147 (MQ=11) aaaTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCAGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCATTCAAATCCAATAGATTGTAGTGACACTGTAGTCCTGATAAGAGTAGAGCaa > 1:209162/1‑148 (MQ=11) aTGGCGCTGTAAAATGCGTCATTTTCATATTGTAGAAAATGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGACTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCa < 1:173558/149‑1 (MQ=255) aGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa > 1:72836/1‑73 (MQ=35) aGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa < 2:72836/73‑1 (MQ=35) tgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCt < 1:33259‑M2/22‑1 (MQ=255) tgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCt > 2:33259‑M2/31‑52 (MQ=255) aGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATgg < 2:153382/149‑1 (MQ=35) tGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAc < 2:110647‑M2/38‑1 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAc > 1:110647‑M2/2‑39 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAACCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGTATCAGGCAATGTTGAGTTTGTCATAAGTTCTAAATGGTGCTTTATAAAGTGCCAtttt > 1:89665‑M2/2‑149 (MQ=255) | TGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTT > NC_000913_3_vch_tpiA/1552102‑1552396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |