| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 1552101 = | NA (NA) | 7 (0.310) | 7/262 | 1.8 | NA | noncoding (31/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 1552249 = | NA (NA) | noncoding (1/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTA > NC_000913_3_vch_tpiA/1551952‑1552236 | gatgggagaagagagaagagGGTGTGAAGAAGGGATATAAGCTCTTTTGAACTTTAAGCTGAAAATGGCGTTGTAAAAGGCGCCATTTT‑ATATTGTAGACAGCGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa < 2:5235/143‑1 (MQ=18) aaaatggcactttataaagcaccatttagaacttatgacaaactcaacattgcctgatacgctacgcttatcaggcctacacgttcactgcaatctattggatttgaaggtttttcatgccggataaggcgttcacgccgcatccggca > 1:89665‑M1/149‑149 (MQ=255) aaGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAAAGCCTTATCCTGCa > 1:174999/1‑149 (MQ=255) gAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaaaa < 1:403921/149‑1 (MQ=255) gCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGAAAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc < 1:138036/149‑1 (MQ=255) gCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGAGCCGTAAAATGCGCCCTTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCTGGATGCGGCGTCAACGCCTTATTCGGCCTGCAAAccc > 2:106584/1‑149 (MQ=21) aaaaaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGAAAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTc < 2:384024/149‑1 (MQ=255) agagagTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCtt < 2:397651/143‑1 (MQ=255) agagagTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCtt > 1:397651/1‑143 (MQ=255) aagaagGTATATAATCTCTTTTGATCTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGAt < 1:124814/149‑1 (MQ=255) aagaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTCTCCGGCATGAAAACCCTTCAAATCCACCAGAt > 2:285234/1‑149 (MQ=255) aaTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGGTGCGGCGTGAACACCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTAAACgt > 1:339528/1‑149 (MQ=255) tctTTTGATCTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAg < 1:142628/149‑1 (MQ=255) tctTTTGAACTTTAAGCTGAAAATGGCGCTGTTAACGGACTCCTGTTCATATTGTAGACATCGTAGGCTTTGTTCATGCCGGATGCGGCGTGATCGCCTTATCCGGCATGAAAAACCTTCAAATCCAATATATTGCAGTGAACGTGTAg < 2:347415/149‑1 (MQ=14) ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGAtt < 2:52721/132‑1 (MQ=255) ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGAtt > 1:52721/1‑132 (MQ=255) ttAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTTAACGCCTTATTCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGc < 1:142179/149‑1 (MQ=255) gCTGAAAATGGAGATTTAAAAGGCGTAATTTAAATATTGTCGAAAACGTAGGCTTTGTTAATGCCGGATGCGGCGTGAACGCATTATCCGGAATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAg < 1:421573/149‑1 (MQ=11) tGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATCAGCGTAgcg > 2:9592/1‑149 (MQ=25) aaaaGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTg < 2:162421/149‑1 (MQ=32) gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCCGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt > 1:419625/1‑149 (MQ=17) tAGACAGCGTAGGTCTTGTTCATGCCGGATGCGGTGTGAACGCCTTATCCGGTATGAAAACCGTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg < 2:342538/149‑1 (MQ=11) gggtttGTTCATGGCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCTTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa < 1:54092/146‑1 (MQ=255) tttGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTTTAATGGCGTTGTaaaacgt > 2:107689/1‑146 (MQ=255) gttttcatgccggataaggcgttcacgccgcatccggca < 2:110647‑M1/1‑1 (MQ=255) gttttcatgccggataaggcgttcacgccgcatccggca > 1:110647‑M1/39‑39 (MQ=255) tgccggataaggcgttcacgccgcatccggcATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATAGCGCTGTAAAAGGCGTCAtttt < 1:121063‑M1/118‑1 (MQ=255) gccggataaggcgttcacgccgcatccggcATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt > 1:380036‑M1/31‑109 (MQ=255) gccggataaggcgttcacgccgcatccggcATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt < 2:380036‑M1/79‑1 (MQ=255) ataaggcgttcacgccgcatccggcATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGtt < 2:203583‑M1/89‑1 (MQ=255) ataaggcgttcacgccgcatccggcATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGtt > 1:203583‑M1/26‑114 (MQ=255) gcggcgTGAACGGCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:107055/149‑1 (MQ=255) aggcgttcacgccgcatccggcATGAAAACCCTTCAAATCCAATAGATTGCa > 2:33259‑M1/23‑52 (MQ=255) aggcgttcacgccgcatccggcATGAAAACCCTTCAAATCCAATAGATTGCa < 1:33259‑M1/30‑1 (MQ=255) cGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTTATATTGTAGCAAACGtc > 2:108053/1‑148 (MQ=255) ttATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTCGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:217882/1‑105 (MQ=25) ttATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg < 2:109010/105‑1 (MQ=38) ttATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg < 2:217882/105‑1 (MQ=38) ttATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:109010/1‑105 (MQ=35) | GAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTA > NC_000913_3_vch_tpiA/1551952‑1552236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |