| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 1718424 | 17 (0.770) | 4 (0.190) | 3/270 | 2.9 | 20.4% | intergenic (‑29/+69) | mliC/anmK | inhibitor of c‑type lysozyme, membrane‑bound; putative lipoprotein/anhydro‑N‑acetylmuramic acid kinase |
| ? | NC_000913_3_vch_pgi | = 1718429 | 15 (0.710) | intergenic (‑34/+64) | mliC/anmK | inhibitor of c‑type lysozyme, membrane‑bound; putative lipoprotein/anhydro‑N‑acetylmuramic acid kinase | |||||
CACACTGGTATTCCAGCGTATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCG > NC_000913_3_vch_pgi/1718284‑1718575 | cacaCTGCTACTCAGTCGTATCGTGTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGTAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACgcc > 2:214952‑M2/1‑146 (MQ=255) acacTGGTATTCCAGCGTATCGGTTTGCCTGCGATCCCGCAGCATATTAAAGGCGCTACAGCCGGAGAGCAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTACCTCGTGTGTTGGGCCATCTGccc > 2:166481/1‑149 (MQ=255) cAGCGTATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTc > 2:120694/1‑149 (MQ=255) tATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTGTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAgc > 1:185330/1‑148 (MQ=255) cGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTa < 2:290353/149‑1 (MQ=255) gcTCAACCAGCTGATTAAAGGCGCTACAGCCGGGGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATGTCCGGAAGACTTTCCTGGTCAGGAGGGCAATAAGCCCTCCCTACCGTTCCAAGTGTAACGGCAGCcgcg > 1:131960/1‑149 (MQ=255) gCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGaaaa > 1:326513/1‑149 (MQ=255) cTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAActct < 2:225766/149‑1 (MQ=255) gagagaAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCAAACGCTACAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACg < 2:261359/149‑1 (MQ=255) tAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGAGGAAAATAAccac > 2:80022/1‑147 (MQ=255) ttCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCt < 2:51873/149‑1 (MQ=255) aTAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATATGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAACTAGCCCCCAGTACCGTCTCCTGGc > 2:37502/1‑149 (MQ=255) atatCCCGAAGACTTTCCTGGTCTGGAGGGCAATACgccctccagaccaggaaagtcttcgggatatgactatgaaaaaactgttaattatcattttgccggtccttctctccggctgtagcgcctttaatcagct < 1:385495‑M2/136‑101 (MQ=255) atatCCCGAAGACTTTCCTGGTCTGGAGGGCAATACgccctccagaccaggaaagtcttcgggatatgactatgaaaaaactgttaattatcattttgccggtccttctctccggctgtagcgcctttaatcagct > 2:385495‑M2/1‑36 (MQ=255) gactaCTCTCCTGCTCTGGAGTGCACTACGCCCTCCCCAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTACCTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGAc < 1:166481/145‑1 (MQ=255) cTTTCCTGGTCGGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATAGCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGGCTCCTGGCTTGCGCCAGTGACGGAAg < 1:275153/149‑1 (MQ=255) tttCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAgg > 1:204466/1‑149 (MQ=255) ccTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAg < 2:326513/149‑1 (MQ=255) tGGTCTGGAGGGCAATACgccctcccgaccaggaaagtcttcgggatatgactatgaaaaaactgttaattataattttgccggtccttctctccggctgtagcgcctttaatcagctggtcgagcgcatgccaaccgatacgctggaa < 1:373911‑M2/149‑132 (MQ=255) tGGTCTGGAGGGCAATACgccctccagaccaggaaagtcttcgggatatgactatgaaaaaactgttaattatcattttgccggtccttctctccggctgtagcgcctttaatcagctggttgagcgcatgcaaaccgatacgctggaa < 2:302222‑M2/149‑132 (MQ=255) tACGCCCTCCCTAACGTTCCAAGAGTACCGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATAAAGGGTTAGCGGGGAAAATAGCCCCCGGTACCCTGTCCGGGGTTGCGCCAGTGAAGGAAGGCAGATTTCCTGGTAATCCCg > 1:73154/1‑149 (MQ=255) | CACACTGGTATTCCAGCGTATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCG > NC_000913_3_vch_pgi/1718284‑1718575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |