New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 1718424	17 (0.770)	4 (0.190)	3/270	2.9	20.4%	intergenic (‑29/+69)	mliC/anmK	inhibitor of c‑type lysozyme, membrane‑bound; putative lipoprotein/anhydro‑N‑acetylmuramic acid kinase
	?	NC_000913_3_vch_pgi	= 1718429	15 (0.710)					intergenic (‑34/+64)	mliC/anmK	inhibitor of c‑type lysozyme, membrane‑bound; putative lipoprotein/anhydro‑N‑acetylmuramic acid kinase

TCATCACACTGGTATTCCAGCGTATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAA  >  NC_000913_3_vch_pgi/1718280‑1718570                                                                                                                                                 |                                                                                                                                                   tcatcaCACTGGTATTCCAGCGTATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATa                                                                                                                                                <  2:156949/149‑1 (MQ=255) tcagcaCACCGGGCTTCCAGCGTAGCGGGTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATa                                                                                                                                                <  2:128186/149‑1 (MQ=255)     cacaCTGCTACTCAGTCGTATCGTGTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGTAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACgcc                                                                                                                                            >  2:214952‑M2/1‑146 (MQ=255)      acacTGGTATTCCAGCGTATCGGTTTGCCTGCGATCCCGCAGCATATTAAAGGCGCTACAGCCGGAGAGCAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTACCTCGTGTGTTGGGCCATCTGccc                                                                                                                                           >  2:166481/1‑149 (MQ=255)               ttCCAGCGTATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCgtattgccctccagacca                                                                                                                                  <  2:302222‑M1/149‑19 (MQ=255)               ttCCAGCGTATCGGTTGGCATGCGCTCGACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATTATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCGGGAGGGCgtattgccctccagacca                                                                                                                                  <  1:373911‑M1/149‑19 (MQ=255)                  cAGCGTATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTc                                                                                                                               >  2:120694/1‑149 (MQ=255)                       tATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTGTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAgc                                                                                                                          >  1:185330/1‑148 (MQ=255)                          cGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTa                                                                                                                       <  2:290353/149‑1 (MQ=255)                                      gcTCAACCAGCTGATTAAAGGCGCTACAGCCGGGGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATGTCCGGAAGACTTTCCTGGTCAGGAGGGCAATAAGCCCTCCCTACCGTTCCAAGTGTAACGGCAGCcgcg                                                                                                           >  1:131960/1‑149 (MQ=255)                                              aGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCgtattgccctccagaccaggaaagtcttcgggatat                                                                                                                >  2:385495‑M1/1‑100 (MQ=255)                                              aGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCgtattgccctccagaccaggaaagtcttcgggatat                                                                                                                <  1:385495‑M1/136‑37 (MQ=255)                                               gCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGaaaa                                                                                                  >  1:326513/1‑149 (MQ=255)                                                             cTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAActct                                                                                    <  2:225766/149‑1 (MQ=255)                                                                      gagagaAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCAAACGCTACAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACg                                                                           <  2:261359/149‑1 (MQ=255)                                                                                            tAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGAGGAAAATAAccac                                                     >  2:80022/1‑147 (MQ=255)                                                                                                          ttCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCt                                       <  2:51873/149‑1 (MQ=255)                                                                                                             aTAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATATGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAACTAGCCCCCAGTACCGTCTCCTGGc                                    >  2:37502/1‑149 (MQ=255)                                                                                                                   atatCCCGAAGACTTTCCTGGTCTGGAGGGCAATACgccctccagaccaggaaagtcttcgggatatgactatgaaaaaactgttaattatcattttgccggtccttctctccggctgtagcgcctttaatcagct                                           <  1:385495‑M2/136‑101 (MQ=255)                                                                                                                   atatCCCGAAGACTTTCCTGGTCTGGAGGGCAATACgccctccagaccaggaaagtcttcgggatatgactatgaaaaaactgttaattatcattttgccggtccttctctccggctgtagcgcctttaatcagct                                           >  2:385495‑M2/1‑36 (MQ=255)                                                                                                                          gactaCTCTCCTGCTCTGGAGTGCACTACGCCCTCCCCAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTACCTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGAc                       <  1:166481/145‑1 (MQ=255)                                                                                                                               cTTTCCTGGTCGGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATAGCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGGCTCCTGGCTTGCGCCAGTGACGGAAg                  <  1:275153/149‑1 (MQ=255)                                                                                                                                tttCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAgg                 >  1:204466/1‑149 (MQ=255)                                                                                                                                   ccTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAg              <  2:326513/149‑1 (MQ=255)                                                                                                                                     tGGTCTGGAGGGCAATACgccctcccgaccaggaaagtcttcgggatatgactatgaaaaaactgttaattataattttgccggtccttctctccggctgtagcgcctttaatcagctggtcgagcgcatgccaaccgatacgctggaa            <  1:373911‑M2/149‑132 (MQ=255)                                                                                                                                     tGGTCTGGAGGGCAATACgccctccagaccaggaaagtcttcgggatatgactatgaaaaaactgttaattatcattttgccggtccttctctccggctgtagcgcctttaatcagctggttgagcgcatgcaaaccgatacgctggaa            <  2:302222‑M2/149‑132 (MQ=255)                                                                                                                                               ggCgtattgccctccagaccaggaaagtcttcgggatatgactatgaaaaaactgttaattatcattttaccggtccttctctccggctgtagcgcctttaatcagctggttgagcgcatgcaacacgatacgactgagtagcagtgtg  >  2:214952‑M1/1‑3 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TCATCACACTGGTATTCCAGCGTATCGGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAA  >  NC_000913_3_vch_pgi/1718280‑1718570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.