Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_pae_pgi 1,678,015 Δ73 bp intergenic (‑112/‑340) pntA ← / → ydgH pyridine nucleotide transhydrogenase, alpha subunit/DUF1471 family periplasmic protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_pae_pgi 1678015 1678087 73 157 [0] [0] 160 pntA/ydgH pyridine nucleotide transhydrogenase, alpha subunit/DUF1471 family periplasmic protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 16780140 (0.000)156 (1.110) 104/262 0.2 100% intergenic (‑111/‑413) pntA/ydgH pyridine nucleotide transhydrogenase, alpha subunit/DUF1471 family periplasmic protein
?NC_000913_3_pae_pgi 1678088 = 0 (0.000)intergenic (‑185/‑339) pntA/ydgH pyridine nucleotide transhydrogenase, alpha subunit/DUF1471 family periplasmic protein

Only 100 of 157 total aligned reads displayed.

TTCATTGGTTAACCGTTCTCTTGGTATGCCAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACGCCCTATAACGTACTGAAAATTATGCCTGTGATCTAGCGCCAAAAATCAGTATTTCGGCGTGAACTCGCAAAATATTAACGATTCAGCCGTGATAGTGGGATAAACACCTTAGAACGCCGGATAAAGACTGATAATTGTCTTCGACGG  >  NC_000913_3_pae_pgi/1677865‑1678162
                                                                                                                                                     |                                                                                                                                                    
ttCATTGGTTACCCGTTCTCTTGGTATGCCAATTGGCATGATATTCCCTTCCCTCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCGTGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAAc                                                                                                                                                      <  2:1292680/150‑1 (MQ=255)
           aCCGTTCTCTTGGTATGCCAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgatt                                                                                                                                           <  3:596137‑M1/150‑12 (MQ=255)
             cGTTCTCTTGGTATGCCAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattca                                                                                                                                         >  1:1203991‑M1/1‑137 (MQ=255)
               ttCTCTTGGTATGCCAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagc                                                                                                                                       >  3:334591‑M1/1‑135 (MQ=255)
                         aTGCCAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtg                                                                                                                             <  3:326614‑M1/150‑26 (MQ=255)
                          tGCCAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTGACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgg                                                                                                                            >  1:952462‑M1/1‑124 (MQ=255)
                           gCCAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtggg                                                                                                                           >  3:919761‑M1/1‑123 (MQ=255)
                            ccAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtggga                                                                                                                          >  1:599826‑M1/1‑122 (MQ=255)
                              aaTTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggata                                                                                                                        >  4:210151‑M1/1‑120 (MQ=255)
                                     aTGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacacct                                                                                                                 <  3:708235‑M1/150‑38 (MQ=255)
                                      tGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagacgtgatagtgggataaacacctt                                                                                                                >  2:1559269‑M1/1‑112 (MQ=255)
                                           ttCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaac                                                                                                                     >  4:771372‑M1/1‑107 (MQ=255)
                                              ccTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgcttcagccgtgatagtggcataaacaccttagaacgcc                                                                                                        >  4:509989‑M1/1‑104 (MQ=255)
                                              ccTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgcc                                                                                                        >  1:630724‑M1/1‑104 (MQ=255)
                                               cTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccg                                                                                                       <  4:334591‑M1/150‑48 (MQ=255)
                                               cTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccg                                                                                                       <  1:841717‑M1/150‑48 (MQ=255)
                                               cTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccg                                                                                                       <  2:1593832‑M1/150‑48 (MQ=255)
                                                ttCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccgg                                                                                                      <  3:938647‑M1/150‑49 (MQ=255)
                                                 tCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccgga                                                                                                     <  4:500577‑M1/150‑50 (MQ=255)
                                                   cATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggata                                                                                                   <  2:833496‑M1/150‑52 (MQ=255)
                                                    aTCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAATCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataa                                                                                                  >  4:792061‑M1/1‑98 (MQ=255)
                                                     tCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTATGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaa                                                                                                 >  3:197285‑M1/1‑97 (MQ=255)
                                                     tCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaa                                                                                                 <  1:1015465‑M1/150‑54 (MQ=255)
                                                     tCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtg                                                                                                                             >  4:711935‑M1/1‑97 (MQ=255)
                                                       ggTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaaga                                                                                               >  2:353566‑M1/1‑95 (MQ=255)
                                                              ttGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataa                                                                                        >  4:633842‑M1/1‑88 (MQ=255)
                                                               tgatgaTGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataat                                                                                       <  4:1041593‑M1/150‑64 (MQ=255)
                                                                gatgatGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataatt                                                                                      <  2:1212788‑M1/150‑65 (MQ=255)
                                                                 atgatgGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattg                                                                                     >  1:1207329‑M1/1‑85 (MQ=255)
                                                                     tgGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtctt                                                                                 >  4:560512‑M1/1‑81 (MQ=255)
                                                                      ggTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttc                                                                                <  3:633842‑M1/150‑71 (MQ=255)
                                                                        tttGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcga                                                                              >  4:243559‑M1/1‑78 (MQ=255)
                                                                          tGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacg                                                                            <  3:243559‑M1/150‑75 (MQ=255)
                                                                             cTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtc                                                                         <  4:27169‑M1/150‑78 (MQ=255)
                                                                             cTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgat                                                                                          <  2:585975‑M1/133‑61 (MQ=255)
                                                                             cTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgat                                                                                          >  1:585975‑M1/1‑73 (MQ=255)
                                                                               gtgtCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggttaaacaccttagaacgccggataaagactgataattgtcttcgacggtcgg                                                                       >  1:1374520‑M1/1‑71 (MQ=255)
                                                                                 gtCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggt                                                                     <  2:1207329‑M1/150‑82 (MQ=255)
                                                                                      gAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtat                                                                                                                                                   <  3:423530‑M1/67‑4 (MQ=255)
                                                                                      gAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtat                                                                                                                                                   >  4:423530‑M1/1‑64 (MQ=255)
                                                                                        gCCATACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGATAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacga                                                              <  4:919761‑M1/150‑89 (MQ=255)
                                                                                        gCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacga                                                              <  2:1203991‑M1/150‑89 (MQ=255)
                                                                                         ccACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgag                                                             <  3:117523‑M1/150‑90 (MQ=255)
                                                                                            cacaAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaac                                                                <  2:514045‑M1/144‑87 (MQ=255)
                                                                                            cacaAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacacctta                                                                                                               >  4:506487‑M1/1‑58 (MQ=255)
                                                                                            cacaAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacacctta                                                                                                               <  3:506487‑M1/97‑40 (MQ=255)
                                                                                             acaAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacat                                                         >  2:20749‑M1/1‑57 (MQ=255)
                                                                                             acaAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtat                                                                                                                                                   >  3:989031‑M1/1‑57 (MQ=255)
                                                                                               aaGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcg                                                       >  3:36386‑M1/1‑55 (MQ=255)
                                                                                               aaGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgaga                                                            <  2:735694‑M1/145‑91 (MQ=255)
                                                                                               aaGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgaga                                                            >  1:735694‑M1/1‑55 (MQ=255)
                                                                                               aaGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacac                                                                                                                   >  4:720150‑M1/1‑55 (MQ=255)
                                                                                               aaGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacac                                                                                                                   <  3:720150‑M1/90‑36 (MQ=255)
                                                                                                  ctgctCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccc                                                    >  2:600480‑M1/1‑52 (MQ=255)
                                                                                                        aTGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccg                                                                                                       >  3:741386‑M1/1‑46 (MQ=255)
                                                                                                           tACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaa                                           >  1:833721‑M1/1‑43 (MQ=255)
                                                                                                            aCGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaat                                          >  1:933431‑M1/1‑42 (MQ=255)
                                                                                                             cGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgcc                                                                                                        >  2:1324454‑M1/1‑41 (MQ=255)
                                                                                                              gAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatca                                        >  4:554690‑M1/1‑40 (MQ=255)
                                                                                                              gAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatca                                        <  3:792061‑M1/150‑111 (MQ=255)
                                                                                                                    aaggttaCTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactactt                                  <  1:1565912‑M1/147‑117 (MQ=255)
                                                                                                                    aaTGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaat                                          <  1:412708‑M1/142‑109 (MQ=255)
                                                                                                                      tGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaa                                >  4:903656‑M1/1‑32 (MQ=255)
                                                                                                                      tGTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaa                                <  4:21809‑M1/150‑119 (MQ=255)
                                                                                                                       gTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacac                                                                                                                   >  1:1163365‑M1/1‑31 (MQ=255)
                                                                                                                       gTTACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacac                                                                                                                   <  2:1163365‑M1/66‑36 (MQ=255)
                                                                                                                         tACTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgat                                                                                          <  3:870948‑M1/89‑61 (MQ=255)
                                                                                                                          aCTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacatt                            >  1:1523785‑M1/1‑28 (MQ=255)
                                                                                                                          aCTCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacatt                            <  2:1412922‑M1/150‑123 (MQ=255)
                                                                                                                            tCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacat                                                         <  3:215696‑M1/119‑94 (MQ=255)
                                                                                                                            tCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacat                                                         >  4:215696‑M1/1‑26 (MQ=255)
                                                                                                                            tCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcggg                                                                      <  2:405259‑M1/106‑81 (MQ=255)
                                                                                                                            tCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcggg                                                                      >  1:405259‑M1/1‑26 (MQ=255)
                                                                                                                            tCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactga                                                                                           <  1:1345575‑M1/85‑60 (MQ=255)
                                                                                                                            tCCGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactga                                                                                           >  2:1345575‑M1/1‑26 (MQ=255)
                                                                                                                              cGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaat                        >  4:682133‑M1/1‑24 (MQ=255)
                                                                                                                              cGTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaat                        >  1:151698‑M1/1‑24 (MQ=255)
                                                                                                                               gTTAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacat                             <  1:1306341‑M1/144‑122 (MQ=255)
                                                                                                                                ttAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaatta                      >  4:964709‑M1/1‑22 (MQ=255)
                                                                                                                                ttAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaatta                      <  2:952462‑M1/150‑129 (MQ=255)
                                                                                                                                 tAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaa                     <  1:365799‑M1/150‑130 (MQ=255)
                                                                                                                                 tAAAATAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaa                     >  2:365799‑M1/1‑21 (MQ=255)
                                                                                                                                  aaaaTAAATTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaac                    <  2:151698‑M1/150‑131 (MQ=255)
                                                                                                                                    aataaatTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacg                                                                            <  3:504285‑M1/92‑75 (MQ=255)
                                                                                                                                     ataaatTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaactta                 <  1:20749‑M1/150‑134 (MQ=255)
                                                                                                                                       aaatTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaacttata               <  2:866493‑M1/150‑136 (MQ=255)
                                                                                                                                         atTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactac                                    <  3:648834‑M1/127‑115 (MQ=255)
                                                                                                                                         atTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacga                                                              >  2:1017318‑M1/1‑13 (MQ=255)
                                                                                                                                         atTAGTAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacga                                                              <  1:1017318‑M1/101‑89 (MQ=255)
                                                                                                                                              tAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaacttatacaattca        <  4:638545‑M1/150‑143 (MQ=255)
                                                                                                                                              tAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaacttatacaattca        <  3:903656‑M1/150‑143 (MQ=255)
                                                                                                                                              tAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggt                                                                     >  2:628842‑M1/1‑8 (MQ=255)
                                                                                                                                              tAACAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggt                                                                     <  1:628842‑M1/89‑82 (MQ=255)
                                                                                                                                                aCAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaatta                      >  2:1269901‑M1/1‑6 (MQ=255)
                                                                                                                                                aCAAACtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaatta                      <  1:1269901‑M1/134‑129 (MQ=255)
                                                                                                                                                  aaaCtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaacttatacaattcagttg    >  1:1391306‑M1/1‑4 (MQ=255)
                                                                                                                                                  aaaCtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgcccc                                                   >  2:739024‑M1/1‑4 (MQ=255)
                                                                                                                                                   aaCtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaacttatacaattcagttgc   <  3:21390‑M1/150‑148 (MQ=255)
                                                                                                                                                   aaCtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaacttatacaattcagttgc   <  1:1136565‑M1/150‑148 (MQ=255)
                                                                                                                                                    aCtattaacgattcagccgtgatagtgggataaacaccttagaacgccggataaagactgataattgtcttcgacggtcgggtaaaacgagacatcgccccggcacgaatcactacttaacattaaattaacttatacaattcagttgct  <  3:554690‑M1/150‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TTCATTGGTTAACCGTTCTCTTGGTATGCCAATTCGCATGATATTCCCTTCCATCGGTTTTATTGATGATGGTTTGCCTGTGTCAGGAGCCACACAAGCTGCTCATGTACGAGCTAAATGTTACTCCGTTAAAATAAATTAGTAACAAACGCCCTATAACGTACTGAAAATTATGCCTGTGATCTAGCGCCAAAAATCAGTATTTCGGCGTGAACTCGCAAAATATTAACGATTCAGCCGTGATAGTGGGATAAACACCTTAGAACGCCGGATAAAGACTGATAATTGTCTTCGACGG  >  NC_000913_3_pae_pgi/1677865‑1678162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: