New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	3877544 =	NA (NA)	4 (0.190)	4/258	2.5	NA	intergenic (‑79/+161)	yidB/gyrB	DUF937 family protein/DNA gyrase, subunit B
	?	NC_000913_3_pae_pgi	3877573 =	NA (NA)					intergenic (‑108/+132)	yidB/gyrB	DUF937 family protein/DNA gyrase, subunit B

TTTCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATA  >  NC_000913_3_pae_pgi/3877427‑3877717                                                                                                                                                   |                                                                                                                                                 tttCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATATTTTGCTGTGAAGACTTACGTTTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCtt                                                                                                                                                >  1:304808/1‑149 (MQ=255) tttCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGGGATAAACTCGGCCCTTTGCtt                                                                                                                                                >  1:191311/1‑149 (MQ=255)  tgcAGAAAGGGACCGACGACTTGAGTAAAAAGTCCTATGATAATCACCTGTAAAGCGGTACGTGTTGACCCAAAAAGGATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCGCCGCCCTTTTCTta                                                                                                                                               <  2:22953/147‑1 (MQ=255)             aCCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGc                                                                                                                                    <  2:300786/149‑1 (MQ=255)                               aaGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc                                                                                                                  <  1:160917/149‑1 (MQ=255)                                        gATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                                                         >  1:351374/1‑149 (MQ=255)                                                                 gtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGGTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGCAAATTCAATa                                                                                >  1:138288/1‑149 (MQ=255)                                                                       ccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACCTTGc                                                                          >  2:398471/1‑149 (MQ=255)                                                                        taggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATg                                                                                                                              >  2:280344‑M1/47‑96 (MQ=255)                                                                        taggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATg                                                                                                                              <  1:280344‑M1/50‑1 (MQ=255)                                                                         aaaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCaa                                                                        >  1:315778/1‑149 (MQ=255)                                                                               tataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAtttt                                                                  >  1:72873/1‑149 (MQ=255)                                                                                ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTc                                                                 >  2:298523/1‑149 (MQ=255)                                                                                    atgtGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACCAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAg                                                             <  2:361104/146‑1 (MQ=255)                                                                                                 tAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGt                                                >  1:342657/1‑149 (MQ=255)                                                                                                 catccggcaagaagctataagaaaagggcggagatcatctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                     <  1:280344‑M2/46‑1 (MQ=255)                                                                                                 catccggcaagaagctataagaaaagggcggagatcatctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                     >  2:280344‑M2/51‑96 (MQ=255)                                                                                                  aaTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGTTCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa                                               <  2:180199/149‑1 (MQ=255)                                                                                                            tGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAgg                                     <  1:120187/149‑1 (MQ=255)                                                                                                              cAGAAAATAAAAGGGCGGATATGATCTCCGCCCGTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTACCCGGCCTACAAAATCTTGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                   <  2:10986/149‑1 (MQ=21)                                                                                                                            gcggagatcatctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg                                                   <  2:304896‑M2/96‑1 (MQ=255)                                                                                                                            gcggagatcatctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg                                                   >  1:304896‑M2/24‑119 (MQ=255)                                                                                                                                    gctgtccgcccttttCTTATCGCTTCTGGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAATCATGAAAATTCACTACCCTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCAtt             <  1:77801‑M2/134‑1 (MQ=255)                                                                                                                                     atctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTa            >  1:282264‑M2/15‑149 (MQ=255)                                                                                                                                      tctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTGAATACATTGCACGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTaa           >  2:333280‑M2/14‑149 (MQ=255)                                                                                                                                        tccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAat         <  2:342657‑M2/138‑1 (MQ=255)                                                                                                                                          cgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTaaattt       >  2:133237‑M2/10‑147 (MQ=255)                                                                                                                                          cgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAatat       <  2:315778‑M2/140‑1 (MQ=255)                                                                                                                                               ttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATGGata  >  1:17677‑M2/5‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TTTCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATA  >  NC_000913_3_pae_pgi/3877427‑3877717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.