New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	3877544 =	NA (NA)	4 (0.190)	4/258	2.5	NA	intergenic (‑79/+161)	yidB/gyrB	DUF937 family protein/DNA gyrase, subunit B
	?	NC_000913_3_pae_pgi	3877573 =	NA (NA)					intergenic (‑108/+132)	yidB/gyrB	DUF937 family protein/DNA gyrase, subunit B

AAATAGCCTGATATTTCCCCGCATCGCCTTTCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCA  >  NC_000913_3_pae_pgi/3877399‑3877684                                                                                                                                                  |                                                                                                                                             tatccatatttaatggcgctaaccatgcgagcgtgcctgatgcgctacgcttatcaggcctacgaaaatcttgcaatgtattgaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagaaaa                                                                                                                                           >  1:17677‑M1/146‑149 (MQ=255)      atatttaatggcgctaaccatgcgagcgtgcctgatgcgctacgcttatcaggcctacgaaaatcttgcaatgtattgaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCg                                                                                                                                      <  2:315778‑M1/9‑1 (MQ=255)      aaatttaatggcgctaaccatgcgagcgtgcctgatgcgctacgcttatcaggcctacgaaaatcttgcaatgtattgaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCg                                                                                                                                      >  2:133237‑M1/141‑149 (MQ=255)       ccTGATATTTCCCCGCATCGCCTTTCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAGAAGTATAGATTTGCGGGATGATATTTGCGGATTTCAGACATAAAAAGGGCgg                                                                                                                                     >  2:152850/1‑149 (MQ=255)        atttaatggcgctaaccatgcgagcgtgcctgatgcgctacgcttatcaggcctacgaaaatcttgcaatgtattgaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGga                                                                                                                                    <  2:342657‑M1/11‑1 (MQ=255)          ttaatggcgctaaccatgcgagcgtgcctgatgcgctacgcttatcaggcctacgaaaatcgtgcaatgtattcaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGgaga                                                                                                                                  >  2:333280‑M1/137‑149 (MQ=255)           taatggcgctaaccatgcgagcgtgcctgatgcgctacgcttatcaggcctacgaaaatcttgcaatgtattgaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGGAgat                                                                                                                                 >  1:282264‑M1/136‑149 (MQ=255)            aatggcgctaaccatgcgagcgtgcctgatgcgctacgcttatcaggcctacgaaaatcttgcagggtagtgaattttcatgattttgtaggcaggataaggcgttcacgccgcatccggccagaagcgataagAAAAGggcggacagc                                                                                                                                <  1:77801‑M1/15‑5 (MQ=255)               ttCCCCGCATCGCCTTTCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGAtc                                                                                                                             <  2:858/149‑1 (MQ=255)                             tttCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATATTTTGCTGTGAAGACTTACGTTTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCtt                                                                                                               >  1:304808/1‑149 (MQ=255)                             tttCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGGGATAAACTCGGCCCTTTGCtt                                                                                                               >  1:191311/1‑149 (MQ=255)                              tgcAGAAAGGGACCGACGACTTGAGTAAAAAGTCCTATGATAATCACCTGTAAAGCGGTACGTGTTGACCCAAAAAGGATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCGCCGCCCTTTTCTta                                                                                                              <  2:22953/147‑1 (MQ=255)                                         aCCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGc                                                                                                   <  2:300786/149‑1 (MQ=255)                                                  cttatcaggcctacgaaaatcttgcaatgtattgaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGGAGATGATCTCCGc                                                                                                                        >  1:304896‑M1/97‑119 (MQ=255)                                                  cttatcaggcctacgaaaatcttgcaatgtattgaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGGAGATGATCTCCGc                                                                                                                        <  2:304896‑M1/23‑1 (MQ=255)                                                           aaGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc                                                                                 <  1:160917/149‑1 (MQ=255)                                                                    gATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                        >  1:351374/1‑149 (MQ=255)                                                                                             gtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGGTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGCAAATTCAATa                                               >  1:138288/1‑149 (MQ=255)                                                                                                   ccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACCTTGc                                         >  2:398471/1‑149 (MQ=255)                                                                                                    taggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATg                                                                                             >  2:280344‑M1/47‑96 (MQ=255)                                                                                                    taggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATg                                                                                             <  1:280344‑M1/50‑1 (MQ=255)                                                                                                     aaaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCaa                                       >  1:315778/1‑149 (MQ=255)                                                                                                           tataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAtttt                                 >  1:72873/1‑149 (MQ=255)                                                                                                            ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTc                                >  2:298523/1‑149 (MQ=255)                                                                                                                atgtGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACCAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAg                            <  2:361104/146‑1 (MQ=255)                                                                                                                             tAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGt               >  1:342657/1‑149 (MQ=255)                                                                                                                              aaTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGTTCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa              <  2:180199/149‑1 (MQ=255)                                                                                                                                        tGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAgg    <  1:120187/149‑1 (MQ=255)                                                                                                                                          cAGAAAATAAAAGGGCGGATATGATCTCCGCCCGTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTACCCGGCCTACAAAATCTTGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa  <  2:10986/149‑1 (MQ=21)                                                                                                                                                  |                                                                                                                                             AAATAGCCTGATATTTCCCCGCATCGCCTTTCAGAAAGGCACCGACAACTTCATCAAAAAGCCCCATGATAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCA  >  NC_000913_3_pae_pgi/3877399‑3877684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.