| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 1395541 | 9 (0.230) | 43 (1.110) | 39/280 | 0.1 | 82.7% | coding (382/1032 nt) | ynaI | mechanosensitive channel protein, very small conductance |
| ? | NC_000913_3_KO_pgi | 1427777 = | 9 (0.230) | coding (950/981 nt) | insH1 | IS5 transposase and trans‑activator | |||||
CAAGCTGACTCGCTGATTAAAATTTCGCGGATCTGGGCCGATTTTTTTCCCGCAAACACATCGAATCAGCCTATTTAGGCTATTTTTTCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTG > NC_000913_3_KO_pgi/1427630‑1427920 | cAAGCTGGCTCGCTGATTAAAATTTCGCGGATCTGGGCCGATTTTTTTCCCGCAAACACATCGAATCAGCCTATTTAGGCTATTTTTTCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTg < 2:109253/149‑1 (MQ=255) aaGCTGACTCGCTGATTAAAATTTCGCGGATCTGGGCCGATTTTTTTCCCGCAAACACATCGAATCAGCCTATTTAGGCTATTTTTTCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTgg < 1:660950/149‑1 (MQ=255) gaaatagagcataatcccggaaaagaagttactcagaatatctttaccggccataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTc < 1:281857‑M2/5‑1 (MQ=255) aaatagagcataatcccggaaaagaagttactcagaatatctttaccggccataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTcc > 1:552927‑M2/144‑149 (MQ=255) agagcataatcccggaaaagaagttactcagaatatctttaccggccataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCAccc < 1:366714‑M2/10‑1 (MQ=255) agcataatcccggaaaagaagttactcagaatatctttaccggccataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGa < 2:552927‑M2/12‑1 (MQ=255) gcataatcccggaaaagaaggtactcagaatatctttaccggccataacgacagccagaccaccaataccaaccaaggtcagcaagccagaaaacatcatgccgaaatgttcgccataaagcagaacaagcaccaaTGGTCACCCCgac > 2:177970‑M2/137‑148 (MQ=255) gggCCGATTTTTTTCCCGCAAACACATCGAATCAGCCTATTTAGGCTATTTTTTCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAAc < 2:344500/149‑1 (MQ=255) tttaccggccataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaaataaataTTTTCCACCCGCAAAAGGATTTCCAGGGTGAATAACATCGCCAGTTg > 1:504228‑M2/103‑149 (MQ=255) gagcggcaatagcgacacccagacgaacaataccaccagaggtaagcaagccagaaaggctcatgccgaaatgtttgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGt < 2:345964‑M2/49‑1 (MQ=255) ccggccataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGtt > 1:334292‑M2/99‑144 (MQ=255) ccggccataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGtt < 2:334292‑M2/46‑1 (MQ=255) gccataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCg > 2:218822‑M2/96‑149 (MQ=255) ataccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGttt < 1:585153‑M2/57‑1 (MQ=255) ccgacagccagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagccacacTTATCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTc > 1:161859‑M2/90‑149 (MQ=255) cagaccaccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGccc > 1:84617‑M2/82‑149 (MQ=255) caccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTcagca > 1:502135‑M2/77‑140 (MQ=255) caccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTcagca < 2:502135‑M2/64‑1 (MQ=255) caccaataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCCGCCACTTGt > 1:219549‑M2/77‑149 (MQ=255) aataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCt < 2:84617‑M2/77‑1 (MQ=255) aataccaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCt > 1:413538‑M2/73‑149 (MQ=255) accaccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGc < 1:9516‑M2/80‑1 (MQ=255) caccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATaa > 1:533741‑M2/68‑102 (MQ=255) caccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATaa < 2:533741‑M2/35‑1 (MQ=255) caccaaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCtt > 2:243991‑M2/68‑149 (MQ=255) aaaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCAc > 1:458448‑M2/64‑149 (MQ=255) tttCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACg > 1:343563/1‑149 (MQ=255) aaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCa < 1:540145‑M2/85‑1 (MQ=255) aaggtcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCa > 2:540145‑M2/63‑147 (MQ=255) agtcagcaagcaagaaggggtagtgcacatatgttgtccataaagcagaacaagcaccacTGGTCCAGCCGAAACAGGTTGGCCAGGGTGAATTACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGaa < 2:32847‑M2/89‑1 (MQ=255) tcagcaagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCa > 1:554524‑M2/59‑101 (MQ=255) tcagcaagccagaaagcctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCa < 2:554524‑M2/43‑1 (MQ=255) aagccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAAc < 1:243991‑M2/96‑1 (MQ=255) agccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCtt < 2:178032‑M2/71‑1 (MQ=255) agccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCtt > 1:178032‑M2/53‑123 (MQ=255) ccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTg > 2:307733‑M2/51‑71 (MQ=255) ccagaaaggctcatgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTg < 1:307733‑M2/21‑1 (MQ=255) ccagaaaggctcacgacgaaatgtgcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGc < 1:503104‑M2/99‑1 (MQ=255) aaggctcaggccgaaatgtacgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTCGCCCGGGTGAATAACTTCGCCAGGTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCtt < 1:313283‑M2/104‑1 (MQ=255) tCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTgatgat < 2:343563/149‑1 (MQ=255) atgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGTCAGGGTGAATAACATCGCCAGTTGGTTATc < 1:377361‑M2/53‑1 (MQ=255) atgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGTCAGGGTGAATAACATCGCCAGTTGGTTATc > 2:377361‑M2/39‑91 (MQ=255) atgccgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTtgctgatc < 2:529206‑M2/111‑2 (MQ=255) cgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCg < 1:171961‑M2/54‑1 (MQ=255) cgaaatgttcgccataaagcagaacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCg > 2:171961‑M2/35‑88 (MQ=255) tctctcCCACTGACGTATCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCt < 1:182677/146‑1 (MQ=255) tctctcCCACTGACGTATCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCt > 2:182677/1‑146 (MQ=255) aacaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACg > 2:460333‑M2/13‑149 (MQ=255) acaagcaccacTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACgg > 1:495602‑M2/12‑149 (MQ=255) tCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCa < 1:174507/90‑1 (MQ=255) tCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCa > 2:174507/1‑90 (MQ=255) cccacTCGTCCACCCTAAAGAGTTTGGCCAGTGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTGCACGAAGCCGAACTGCCCGACGATTATCCGACACGAGTGCTCCACCCTGGCACGGATGctc < 1:652257‑M2/144‑2 (MQ=255) | CAAGCTGACTCGCTGATTAAAATTTCGCGGATCTGGGCCGATTTTTTTCCCGCAAACACATCGAATCAGCCTATTTAGGCTATTTTTTCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTG > NC_000913_3_KO_pgi/1427630‑1427920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |