New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	687851 =	NA (NA)	47 (0.850)	38/286	0.5	97.9%	intergenic (‑104/+146)	gltI/insH1	glutamate/aspartate periplasmic binding protein/IS5 transposase and trans‑activator
	?	NC_000913_3_bme_pgi	869874 =	1 (0.020)					coding (464/1539 nt)	gsiB	glutathione ABC transporter periplasmic binding protein

AAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/687998‑687851 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACCTGGAATCAGACCGATTTTGTGAAGGTGAA  >  NC_000913_3_bme_pgi/869874‑870015                                                                                                                                                                                                                                                                                                    AAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGACGGATTCAACACATTTACGGGAGACAAAATCGGGTCAAACATGAAGAAATGAAATGACTAAGTCAGCCGAAAAGAGTTTCACCGCTTCTTCACACATTCCT                                                                                                                                               >  2:460606/1‑149   AAACTGGGGATAACGCCTTAAATGGCGAAAAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGAATGAGTCAGCTGAGCAGAATTTCCCCGCTTATTAGCCCCTTCCTTA                                                                                                                                             >  2:120253/1‑149    AACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTAGAACCTTCCTTga                                                                                                                                            >  1:2782/1‑147    AACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCCTATTCGCACCTTCCTTAA                                                                                                                                            >  2:831032/1‑149      CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATA                                                                                                                                          <  1:1000341/149‑1      CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATA                                                                                                                                          <  1:999861/149‑1         GGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCGCAAACATGAAGACATGAAATGACTGAGTCAGCCGAGAGGAATTTCCCAGCTTATACGCACCTTCCTTAATATcc                                                                                                                                       >  2:39533/1‑147            ctctCGCCCTAAATGGCTAATAAACCGTCTAAATAGGCGGATTCAAGGCATTTATGGGAGAAAATATCGGCTCATACATGTAGAAATTAAATGACTTAGTCAGCCGATAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTG                                                                                                                                    <  2:787352/145‑1                  CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCGCCTTCCTTAATATTCTTGGCCATC                                                                                                                              >  1:602902/1‑149                           GCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCACATCCGGCGACCG                                                                                                                     >  2:804175/1‑149                                 AAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGA                                                                                                               <  2:31278/149‑1                                    CGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGAATGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTT                                                                                                            >  1:894792/1‑149                                     GGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAAGGAAATGAGTGAGTCAGCCGAAAAGAATTTCACCGCTAATTCGCACCTTCCTTAATATTCTTGCCCATCCGACGACCGCGATGATTTC                                                                                                           >  2:828893/1‑149                                       TCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCAC                                                                                                         <  1:576198/149‑1                                                     TTCAAGGCATATACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAA                                                                                           >  2:374699/1‑149                                                        AAGGCATTGACGGGAGAAAAAATCGGCTCAAACATGAAGTAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAA                                                                                        <  2:893180/149‑1                                                         AGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTAAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCACTGCAAAcca                                                                                       >  2:193156/1‑146                                                           GCATTTACGGTAGAAAAAATCGGCTCTAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATAT                                                                                     <  1:331155/149‑1                                                                   GGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGC                                                                                                                                   >  1:81376/1‑95                                                                   GGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGC                                                                                                                                   <  2:81376/95‑1                                                                     GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATAATCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAACAAGATGGCCAGGAGA                                                                           >  2:728419/1‑149                                                                       GAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATT                                                                         >  1:522244/1‑149                                                                        AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTG                                                                        <  2:46360/149‑1                                                                              TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGG                                                                                                      <  2:135587/113‑1                                                                              TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGG                                                                                                      >  1:135587/1‑113                                                                                 GCTCAAACATCAAGAAATGTAATTACTCAGTCAGCCGAGAAGAGTTTTTCCGCTTATTCGCACCTTCCTTAATATTTTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATC                                                               <  1:784432/149‑1                                                                                  CTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCC                                                              <  1:622159/149‑1                                                                                   TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCG                                                             >  1:647411/1‑149                                                                                   TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTT                                                                                                                                     <  2:530315/77‑1                                                                                   TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTT                                                                                                                                     >  1:530315/1‑77                                                                                     AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCCCCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGT                                                           >  1:672182/1‑149                                                                                     AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGT                                                           <  1:730087/149‑1                                                                                            AAGAAGTGAAATGACTGAGGCAGCCGAGAAGAATTTCCCCGGTTATTCGCACCTTTCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCTCCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACC                                                    <  2:690140/149‑1                                                                                                    aacTGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTCTTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAACATGGCAAGAAGATTGGTTTTTATCTGTAGGGAACCCGACCGTA                                            >  2:376597/4‑149                                                                                                     AATGACTGAGTCATCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCGTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTAT                                           <  2:154365/149‑1                                                                                                         ACTGAGTCAGCCAAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAAC                                       <  2:72536/149‑1                                                                                                          tgattTCAGTCGAGAGGACTTTCCCCGCTTATTCGCTGCTTTTTTAATATTCTTGCCCATCCTGCGACCGCGATGATTTCACCGTCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACT                                      <  2:791803/144‑1                                                                                                            GAGTCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGG                                    <  1:575029/149‑1                                                                                                                 AGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGGTACC                               >  1:576939/1‑149                                                                                                                  GCCGAGAAGAATTTCCCCGATTATTCGAACCTTCCTTAATATTCTTGCCCATCAGGCGACCGGGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACCT                              <  2:276706/149‑1                                                                                                                      AGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACCTGGAA                          <  1:823297/149‑1                                                                                                                           AATTTCCCCGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACCTGGAATCAGA                     <  1:220029/149‑1                                                                                                                            ATTTCCCCGCTTATTCGGACCGTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACCTGGAATCAGAC                    <  1:851593/149‑1                                                                                                                            ATTTCCCCGCTTATTCGCACCTTCCTTCATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGACCCGGACCGTATGAACTGGATACCTGGAATCAGAC                    <  2:86607/149‑1                                                                                                                                   CGCTTATTCGCACCTTCCTTAATATTCTTGTCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACCTGGAATCAGACCGATTTT             <  1:506550/149‑1                                                                                                                                   CGCTTATTCGCACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACGTGGAATCAAACCGATTTT             >  1:305588/1‑149                                                                                                                                              ACCTTCCTTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACCTGGAATCAGACCGATTTTGTGAAGGTGAA  >  1:780696/1‑149                                                                                                                                                                                                                                                                                                    AAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/687998‑687851 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAATATTCTTGCCCATCCGGCGACCGCGATGATTTCACCGGCAGCGCTGGAAAAATATGGCAAGGAGATTGGTTTTTATCCGGTGGGAACCGGACCGTATGAACTGGATACCTGGAATCAGACCGATTTTGTGAAGGTGAA  >  NC_000913_3_bme_pgi/869874‑870015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.