New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1242091 =	41 (0.680)	5 (0.090)	3/276	7.4	11.0%	intergenic (‑20/+75)	cvrA/ldcA	putative cation/proton antiporter/murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
	?	NC_000913_3_bme_pgi	1242139 =	43 (0.770)					intergenic (‑68/+27)	cvrA/ldcA	putative cation/proton antiporter/murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGACC  >  NC_000913_3_bme_pgi/1241992‑1242276                                                                                                                                                    |                                                                                                                                          gaaAATGAACTTAGTAATATACTGCTGGTTACATGGTTGGATCCTAAGATGAAAAGGCTAATTTTTGTTGTGGCATCCAAGGGTCGGTGACTCCTGATTACGCTGGCTCTTATATAACCCCTACCATATTAGCTGCAGAGACAGCGtttt                                                                                                                                         <  2:96579/150‑1 (MQ=255)  aaaaTGAACTAAGTTATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTAACATATTAGCGGCAGAGACAGCGTTTTa                                                                                                                                        <  1:842560/150‑1 (MQ=255)      tGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTa                                                                                                                                    >  1:727488/1‑150 (MQ=255)      tGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGAATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTa                                                                                                                                    >  1:216490/1‑150 (MQ=255)       gAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAg                                                                                                                                   >  1:623903/1‑150 (MQ=255)          cTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCAGCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGccc                                                                                                                                <  1:827301/150‑1 (MQ=255)            aaGTAATATACTGCTGGGGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCCTCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTg                                                                                                                              <  2:536349/150‑1 (MQ=255)                 atatACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCg                                                                                                                         <  1:693853/150‑1 (MQ=255)                     aCTGCAGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGAt                                                                                                                     <  2:327571/150‑1 (MQ=255)                          tgGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGAtttttt                                                                                                                <  1:785126/150‑1 (MQ=255)                             tGACAAGGATGGATCCTAAGATGAAAAGCCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTAc                                                                                                             <  2:835528/150‑1 (MQ=255)                                  aGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACAtttt                                                                                                        <  1:609457/150‑1 (MQ=255)                                      tggatCCTAAGATGAAAAGGCTAATTATTGTTGTGGCCTCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGa                                                                                                    >  2:295314/1‑150 (MQ=255)                                        gatCCTAAGATGAAAAGGCTAATTTTTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAAc                                                                                                  <  2:760164/150‑1 (MQ=255)                                           ccTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAgg                                                                                               >  1:927191/1‑150 (MQ=255)                                               aGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGa                                                                                           >  1:884867/1‑150 (MQ=255)                                                     aaaGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGCAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCTCTa                                                                                     >  2:893583/1‑150 (MQ=255)                                                            aaTTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCa                                                                              <  2:623903/150‑1 (MQ=255)                                                                 ttgttgTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGa                                                                         >  1:21162/1‑150 (MQ=255)                                                                                  ggtcggtTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGtt                                                        >  2:705274/1‑150 (MQ=255)                                                                                    tcggtTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGACCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAATCACTTCACTTGTGTTAt                                                      >  2:191422/1‑150 (MQ=255)                                                                                         tACTCCTGATTACGATGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTAGTTAGCGCTGAAGCGTGATTTTTTTACATTTTTAGAACTGGATGACCGATAATCGTCATCTGAGTGCCTTCCCGGGTGTTATTCAgt                                                 <  1:145881/150‑2 (MQ=255)                                                                                           cTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAAGAGGATGACCGCTAATCGTCAAATGAGAGCCTTCCCGGGTGTAATTCAGAAt                                               >  2:503322/1‑150 (MQ=255)                                                                                              cTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGCAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGc                                            <  1:196013/150‑1 (MQ=255)                                                                                              cTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGc                                            <  1:853563/150‑1 (MQ=255)                                                                                                gATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTGAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCAt                                          >  2:583212/1‑150 (MQ=255)                                                                                                 aTTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCAtg                                         <  2:10782/150‑1 (MQ=255)                                                                                                     cGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTgcg                                     >  2:154095/1‑150 (MQ=255)                                                                                                      cttGTATCTTATATAATCCCTACCATAATAGCGGCAGAGACAGCGGTTTAATTAGCCCTGAAGCGTGATTTTTTTACATTTTTTGAAGAGGATGACCGCTATTTGTCAACTGAGTGCCTTCCCGGGAGTTATTCAGAATGGCTGGTgcgg                                    <  2:883053/148‑2 (MQ=255)                                                                                                       cTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAATAGTGATTTTTTTAGATTTTAAGAACAGGATGACCGCTAATCGTCAACAGCGTGCCTTCCCGGGTGTTATTCAGAATGGAATGTGCGcc                                   >  2:2774/1‑150 (MQ=255)                                                                                                       cTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGcc                                   <  2:387658/150‑1 (MQ=255)                                                                                                       cTGTCTCTAATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGcc                                   <  2:391067/150‑1 (MQ=255)                                                                                                         gTCTCTTAAATAAACCCTCCCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCATGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCa                                 <  1:483837/150‑1 (MQ=255)                                                                                                                 tataAACCCTACCATATTAGCGGCAGAGACCGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCATCCCGGTTGTTATTCAGAATGGAATGTGAGCCCAACGGCAGc                         >  1:57647/1‑150 (MQ=255)                                                                                                                  ataAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCg                        <  2:216490/150‑1 (MQ=255)                                                                                                                  ataAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCg                        <  2:727488/150‑1 (MQ=255)                                                                                                                   taAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGt                       >  1:1863/1‑150 (MQ=255)                                                                                                                      aCCCTACCAAAATAGCGCCAGAGACAGCGTTTTACTAAGCACTGAATCGTGATATTTTTACATTCTAAGAACAGGATCACAGCTAATCGTCAACTGAGTGCCTTCCCTGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAAc                    <  2:638685/150‑1 (MQ=255)                                                                                                                              atatTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTACCCGTGCgtt            >  2:711443/1‑150 (MQ=255)                                                                                                                              atatTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCgtt            >  2:242747/1‑150 (MQ=255)                                                                                                                                  tacgggCAGAGACATCGTTTTACTTATCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCTATCCCGGGTGTTATTGAGAATTGGATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTc        <  1:709795/146‑1 (MQ=255)                                                                                                                                      ggCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGAGTAACCGTGCGTTGGTCATGa    >  2:520978/1‑150 (MQ=255)                                                                                                                                       gCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGAc   <  2:927191/150‑1 (MQ=255)                                                                                                                                        aagagACAGCGTTTTACTTATGCCTGAAGCGTGATTTTTTTACATTTTCAGAACAGGATGTCCGCTATTCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGAcc  <  2:930126/149‑1 (MQ=255)                                                                                                                                        aagagACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGAcc  <  2:515845/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                          GAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGACC  >  NC_000913_3_bme_pgi/1241992‑1242276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.